NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029491

3300029491: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001846-96



Overview

Basic Information
IMG/M Taxon OID3300029491 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283268 | Ga0244091
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001846-96
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size151715421
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056309Metagenome137N
F059106Metagenome134N
F068811Metagenome124N
F087334Metagenome110N
F087335Metagenome110N
F090514Metagenome108N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244091_100025All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae192783Open in IMG/M
Ga0244091_100222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii69963Open in IMG/M
Ga0244091_100228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii68271Open in IMG/M
Ga0244091_100949All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae23174Open in IMG/M
Ga0244091_101577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii14174Open in IMG/M
Ga0244091_114179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1658Open in IMG/M
Ga0244091_120590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1147Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244091_100025Ga0244091_100025228F056309SLSVVPLLLGASDSLSVSYGMEPEQEALSIVSFKD
Ga0244091_100222Ga0244091_10022210F087335MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNETGEPELLIRCVTEESVETVYQRAANYD
Ga0244091_100228Ga0244091_10022857F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG
Ga0244091_100949Ga0244091_1009499F087334MASRYPFVGAAAHLFPKNAIKMLSFSSSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0244091_101577Ga0244091_10157713F068811MDQDGSEHNICPNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0244091_114179Ga0244091_1141793F059106MHVIAWKIRAILLQIFAWIVDLKARGHLTGYSRKDIKFRQVTIEVHV
Ga0244091_120590Ga0244091_1205902F099269VHGVLLSVQVRELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
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