NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029502

3300029502: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001981-133



Overview

Basic Information
IMG/M Taxon OID3300029502 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133130 | Gp0283400 | Ga0244223
Sample NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001981-133
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size165447476
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai Jiao Tong University, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042936Metagenome157N
F062845Metagenome130N
F067720Metagenome125Y
F067845Metagenome125N
F071325Metagenome122N
F087334Metagenome110N
F087336Metagenome110N
F099269Metagenome103N
F101355Metagenome102N
F105374Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244223_100169All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes108470Open in IMG/M
Ga0244223_100428All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes58637Open in IMG/M
Ga0244223_100472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis54425Open in IMG/M
Ga0244223_100610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae42454Open in IMG/M
Ga0244223_101050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis24938Open in IMG/M
Ga0244223_101814All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales13441Open in IMG/M
Ga0244223_101888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii12898Open in IMG/M
Ga0244223_104751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5112Open in IMG/M
Ga0244223_109905All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis2491Open in IMG/M
Ga0244223_130356All Organisms → cellular organisms → Bacteria → Terrabacteria group655Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244223_100169Ga0244223_10016941F105374MKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAILRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0244223_100428Ga0244223_10042877F067720MASITYEHPGGFTEMYAAQEQFRHVTKMVTKRHHFAALGNMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0244223_100472Ga0244223_10047211F087336MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKKSTLRGKLSKCSFRKQTAN
Ga0244223_100610Ga0244223_1006107F042936MGRGGGKGRVWKPKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPSYLGKVYFRSWLRGK
Ga0244223_101050Ga0244223_10105013F087334MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYSFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0244223_101814Ga0244223_1018141F071325FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0244223_101888Ga0244223_1018885F067845MKHWKNLLVCLLAGVLALGGLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMSHTDDLNVFLYWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0244223_104751Ga0244223_1047513F062845MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNSVPSRACT
Ga0244223_109905Ga0244223_1099053F101355MIEPPFQHGIADMAFGFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCYIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0244223_130356Ga0244223_1303561F099269VHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNTSGAGVDANATSDALVGINYGMSHGSFLSVD
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