NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029533

3300029533: Human fecal microbial communities from Shanghai, China - P114V6



Overview

Basic Information
IMG/M Taxon OID3300029533 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283669 | Ga0245046
Sample NameHuman fecal microbial communities from Shanghai, China - P114V6
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size65501524
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088920Metagenome109Y
F092228Metagenome107N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245046_100002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii601754Open in IMG/M
Ga0245046_100177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis66763Open in IMG/M
Ga0245046_100386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales33471Open in IMG/M
Ga0245046_100600All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae20364Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245046_100002Ga0245046_100002261F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNEIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0245046_100177Ga0245046_10017714F088920VSANLHHYPAFGAGVILHLILHFSQKAAIFAPKRVILLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKDQLEMR
Ga0245046_100386Ga0245046_1003862F097172MKKNVFKKMMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGSDKNGYPVNGFSKAAFYKDLNSLPSVKTGKTTVNVPAVTSSIKSVSKEKDNPCYESFVKFKAPKTGKYVVTINNLQGTDDKSLRCMMYYGFYQATKMGKKYRIDIIGPDTVGKYDTLYENNYLAKFRTIFDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYRK
Ga0245046_100600Ga0245046_1006005F097172MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATRKVTSAYKYHLIGCDKKGYVMDGFSKAAFYKDLNSLPTVKTGKTTVNVPAVTSSVKSVSKEKGKPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPVKNEKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYTDVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
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