Basic Information | |
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IMG/M Taxon OID | 3300029543 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133133 | Gp0283612 | Ga0244989 |
Sample Name | Human fecal microbial communities from Shanghai, China - P083V1 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 160048083 |
Sequencing Scaffolds | 8 |
Novel Protein Genes | 8 |
Associated Families | 8 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From Shanghai, China |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | China: Shanghai | |||||||
Coordinates | Lat. (o) | 31.2112312 | Long. (o) | 121.4647709 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026489 | Metagenome | 197 | N |
F059106 | Metagenome | 134 | N |
F062845 | Metagenome | 130 | N |
F067845 | Metagenome | 125 | N |
F070093 | Metagenome | 123 | N |
F080163 | Metagenome | 115 | N |
F087334 | Metagenome | 110 | N |
F087336 | Metagenome | 110 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0244989_100369 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 67501 | Open in IMG/M |
Ga0244989_100890 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 30040 | Open in IMG/M |
Ga0244989_101549 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 14945 | Open in IMG/M |
Ga0244989_107783 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena | 2639 | Open in IMG/M |
Ga0244989_110814 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae | 1888 | Open in IMG/M |
Ga0244989_112646 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis | 1607 | Open in IMG/M |
Ga0244989_136842 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium | 535 | Open in IMG/M |
Ga0244989_138963 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312 | 500 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0244989_100369 | Ga0244989_10036962 | F026489 | MRSAGKVLLAEGCSLLVAKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF |
Ga0244989_100890 | Ga0244989_10089012 | F067845 | MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAELLDDAAGHSEMGAAFIDYNGTAYVVAVFR |
Ga0244989_101549 | Ga0244989_10154918 | F059106 | MHAIVWKIRMILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV |
Ga0244989_107783 | Ga0244989_1077834 | F070093 | FESLLLAEFCPFRIDPPMEPEQEHLFKLYSGSGIHSLPELNPNLLQNIHRM |
Ga0244989_110814 | Ga0244989_1108143 | F080163 | MKTIKFLQESFETKERFQQEISIKYSYNRNTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCNAKQFLEIINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL |
Ga0244989_112646 | Ga0244989_1126463 | F087334 | PFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ |
Ga0244989_136842 | Ga0244989_1368422 | F087336 | VILSDTPISSSMHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIRDDAIGHGRVSDRILAEIEDNHMRERGTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP |
Ga0244989_138963 | Ga0244989_1389631 | F062845 | MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNAVPP |
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