NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029548

3300029548: Human fecal microbial communities from Shanghai, China - P092V1



Overview

Basic Information
IMG/M Taxon OID3300029548 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283626 | Ga0245003
Sample NameHuman fecal microbial communities from Shanghai, China - P092V1
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size167728534
Sequencing Scaffolds10
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F047126Metagenome150N
F060985Metagenome / Metatranscriptome132N
F064817Metagenome128N
F067845Metagenome125N
F073656Metagenome120N
F077405Metagenome117N
F084124Metagenome112Y
F088914Metagenome109N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245003_100254Not Available85113Open in IMG/M
Ga0245003_100282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii78435Open in IMG/M
Ga0245003_100682All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii40930Open in IMG/M
Ga0245003_104214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6053Open in IMG/M
Ga0245003_105000All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes4999Open in IMG/M
Ga0245003_106449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae3749Open in IMG/M
Ga0245003_114325All Organisms → cellular organisms → Bacteria → Terrabacteria group1573Open in IMG/M
Ga0245003_125878All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii787Open in IMG/M
Ga0245003_129879All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella662Open in IMG/M
Ga0245003_135212Not Available551Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245003_100254Ga0245003_10025432F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0245003_100254Ga0245003_10025444F044555MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISKFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKI
Ga0245003_100254Ga0245003_10025450F060985MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHAETNLGMCKIFDNQDHGFWHSVIKPWFQLERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKVYPT
Ga0245003_100254Ga0245003_10025451F032312MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIDGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0245003_100282Ga0245003_1002821F084124LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF
Ga0245003_100682Ga0245003_10068238F084124LNKQAKALARATKGNTLHFHSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLLYRTILWALPKPAIFEKIE
Ga0245003_104214Ga0245003_1042147F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLKVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDDLNKFLYWSGCYGVPNDVTVALPLDSTAMTAWLYAPQADSAAAKLLEDAVGHNEMGAAFIDYNGAAYVVAVFR
Ga0245003_105000Ga0245003_1050001F073656MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRK
Ga0245003_106449Ga0245003_1064494F088914VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSIPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
Ga0245003_114325Ga0245003_1143253F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTVAANQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0245003_125878Ga0245003_1258782F067845LALGVLTACSGLGSVNTGTDAEKAAELARQLGVAYAPELDNTAKAVAEWFVQEPDSLQVSGLDLVYTVALDADSNMGHTDDLNAFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHSEMGAAFIDYNGTAYVVAVFR
Ga0245003_129879Ga0245003_1298791F099269VHGVLVSVQAGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0245003_135212Ga0245003_1352122F077405LLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK
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