NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029599

3300029599: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029599 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321324 | Ga0307337
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Glu2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size47609125
Sequencing Scaffolds19
Novel Protein Genes23
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0032
Not Available9
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0382
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012026Metagenome / Metatranscriptome284Y
F020363Metagenome / Metatranscriptome224Y
F020914Metagenome / Metatranscriptome221N
F025291Metagenome / Metatranscriptome202N
F031111Metagenome / Metatranscriptome183N
F036251Metagenome / Metatranscriptome170Y
F042959Metagenome / Metatranscriptome157N
F047076Metagenome / Metatranscriptome150N
F067770Metagenome / Metatranscriptome125N
F068879Metagenome / Metatranscriptome124N
F070158Metagenome / Metatranscriptome123N
F070165Metagenome / Metatranscriptome123N
F070167Metagenome / Metatranscriptome123N
F070267Metagenome / Metatranscriptome123N
F077342Metagenome / Metatranscriptome117N
F092121Metagenome / Metatranscriptome107N
F099361Metagenome / Metatranscriptome103Y
F101222Metagenome / Metatranscriptome102N
F101223Metagenome / Metatranscriptome102N
F103196Metagenome / Metatranscriptome101N
F105253Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307337_101576All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes2384Open in IMG/M
Ga0307337_103487All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031685Open in IMG/M
Ga0307337_103932Not Available1587Open in IMG/M
Ga0307337_103988All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes1576Open in IMG/M
Ga0307337_108799All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031057Open in IMG/M
Ga0307337_109006All Organisms → Viruses → Predicted Viral1044Open in IMG/M
Ga0307337_110321Not Available970Open in IMG/M
Ga0307337_111264Not Available922Open in IMG/M
Ga0307337_113219All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria838Open in IMG/M
Ga0307337_113467Not Available829Open in IMG/M
Ga0307337_114647Not Available789Open in IMG/M
Ga0307337_117382Not Available711Open in IMG/M
Ga0307337_119203All Organisms → cellular organisms → Bacteria670Open in IMG/M
Ga0307337_120090All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038652Open in IMG/M
Ga0307337_121569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium625Open in IMG/M
Ga0307337_121899Not Available619Open in IMG/M
Ga0307337_122797Not Available604Open in IMG/M
Ga0307337_123404All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038595Open in IMG/M
Ga0307337_126241Not Available556Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307337_101576Ga0307337_1015761F031111MKNQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNNPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFP
Ga0307337_103487Ga0307337_1034872F070167MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSQAGLLNLLGL
Ga0307337_103932Ga0307337_1039323F047076MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNHVNQYEDLNNFWKLDIVKIDSVKDTSRDDIFWEVRHRKLLIYDSNRELITNETVGNHNLEIEYWESISGAIKPFPTDTVIENDPNAIEDWNKLIPDISDVEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATIT
Ga0307337_103988Ga0307337_1039881F031111RKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL
Ga0307337_106665Ga0307337_1066651F020914QALPNAQQPGDSTNTIKLDAVADDGLHIVVCAASTTVELGSGATLEIRPTIGVTDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADESAEKVEAFSVR
Ga0307337_108799Ga0307337_1087992F077342MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIDQVFDISAQYFLLYSPTYCRNAGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPRTSVVDKPAEQQRREILNPKRIF
Ga0307337_109006Ga0307337_1090062F070158MADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY
Ga0307337_110321Ga0307337_1103212F101223MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVILDLQPEMDLETFSSIKRNTIDYAIKQAEEAHAKAKAVKAENSK
Ga0307337_110652Ga0307337_1106521F103196KTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA
Ga0307337_111264Ga0307337_1112642F101222MNVWVAIAINIVVYLVSFAYAWGKLNTKISDIEKRYYELEGKMSDIMECSVQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEIKNGKYTK
Ga0307337_113219Ga0307337_1132191F092121MPKHFYTLLIIPHKKKDSVKKFLATPRHFRLATTLLVALFCFLGYCAVDYLTIKLEQMELFNLRRLTSTQQEQIDTLEGKITFFERKLAELKQVDEKIRTMAMDLAGKPRKASRKETAPAREQALGVGGPMPAGETGADK
Ga0307337_113467Ga0307337_1134672F067770MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTIKNKKANR
Ga0307337_114647Ga0307337_1146471F025291LAEWTIRHSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307337_117382Ga0307337_1173822F020363AVILILCPTFGGMWRWRRVAVARVFALVVRCRIMLLLLYSRVGKNRDTRRESPAAAGAGRGASHKAFLFSYPIVAPRSANDIYRPVVHSCFGALWLKSQVLL
Ga0307337_119203Ga0307337_1192031F012026EDRYNPKIIAEINGYKQAIEELSKELNRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMTKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307337_120090Ga0307337_1200902F070267RVEMGSLLLEIGRIPAILHEIRRGVTLDEAFVSAWHPLLGLSILRKYDLPGYLEDILLHSHFPFLQRSLSPTAVIDIAELVVAKSFSRHGKLVIESPLPDGAIESTVGSSIREQFSAIGYGKYVEVRPPPDEQKARRE
Ga0307337_121569Ga0307337_1215691F068879KNKTATIPNRPVYVIGAPWRDNRVTKEEGFVAGATACPGSRRGLPHGVTVFANARINK
Ga0307337_121899Ga0307337_1218991F070165SVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV
Ga0307337_122797Ga0307337_1227971F036251MSAKERQTVLFGDTGVTTPIDTTDRVRLSDGMVFVAQKIEVRPSNAYGEYVVFDGEDLDGKDFHAYSTSSVILQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRR
Ga0307337_123404Ga0307337_1234041F042959MARRKQPAGRIDLKGLDASEIRVRLKEVGPVAEIRLTRANLPLFEEDEFELSLAWGGQRKTYKIPVREGKPLFGALPDSVTGLVERKPQKGAGNLIRELTLAGAAGEATFPMSWGYAIPEEWKPLERIYNGVIEMAR
Ga0307337_126241Ga0307337_1262411F099361MNIKNTDSISILIANSGNQKKYHPVSELKADILADVEADAAFQDIIIQGILGNVAAPDLATKSTITEEDVDPAIAIDVTKNTFADTLSENVGNWIIDFGMTTLAFDTITKVSATEMMIKTTGTAEVGTIRILALKDCFDAPI
Ga0307337_127906Ga0307337_1279061F020914MAIYQKYGFAIDQILSEDQALPNAQPGDSTNTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGATNGAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0307337_129692Ga0307337_1296922F105253LILGKMKKIIFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIKLLEEYE
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