NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029609

3300029609: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36439



Overview

Basic Information
IMG/M Taxon OID3300029609 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283784 | Ga0245148
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36439
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size215490466
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D51

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F029444Metagenome188Y
F042910Metagenome157N
F056682Metagenome137Y
F081354Metagenome114Y
F084124Metagenome112Y
F090513Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245148_100021All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii274657Open in IMG/M
Ga0245148_100075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii167216Open in IMG/M
Ga0245148_100197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales95754Open in IMG/M
Ga0245148_100334All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales72978Open in IMG/M
Ga0245148_100608All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales47210Open in IMG/M
Ga0245148_101318All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae24463Open in IMG/M
Ga0245148_107162All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis4964Open in IMG/M
Ga0245148_116863All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D51886Open in IMG/M
Ga0245148_148952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales553Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245148_100021Ga0245148_10002127F084124LNATANAFARATKGNKHHFNSQRNALTMFLAFLFIMAVACFVKLSASTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0245148_100075Ga0245148_10007511F084124LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFVPKKLLYWKILWALPKPAIFEKIE
Ga0245148_100197Ga0245148_10019786F029444MEVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLKISGIIAEKESQIFGCRFVGFDRPKKAAPFFNF
Ga0245148_100334Ga0245148_10033431F013656MEKKIYKEANNFETETNINVLYKEQIISVYTNKVDLQRKLNKVLGKPTREYKIKRSISGSVWEIPFTDKVKIRNLILKCNIFEL
Ga0245148_100608Ga0245148_1006085F056682MKTQSRAGKAANQPIRQGEIYPASFGAFPSKNRSTFPIQKLGKIYENQEVL
Ga0245148_101318Ga0245148_1013186F081354VKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0245148_107162Ga0245148_1071625F090513MLKIFAMAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY
Ga0245148_116863Ga0245148_1168633F056682VKMQSRAEKVANQPIGQGEIYSASFGAFLSKNRSTFPIQELRKNRENQEVL
Ga0245148_148952Ga0245148_1489521F042910LHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.