NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029657

3300029657: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029657 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321330 | Ga0307343
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_His2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40679629
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.1
Not Available7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin0381

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020914Metagenome / Metatranscriptome221N
F025291Metagenome / Metatranscriptome202N
F039694Metagenome / Metatranscriptome163Y
F040648Metagenome / Metatranscriptome161Y
F047076Metagenome / Metatranscriptome150N
F059033Metagenome / Metatranscriptome134N
F059998Metagenome / Metatranscriptome133Y
F062800Metagenome / Metatranscriptome130N
F067770Metagenome / Metatranscriptome125N
F070165Metagenome / Metatranscriptome123N
F072475Metagenome / Metatranscriptome121N
F077342Metagenome / Metatranscriptome117N
F101222Metagenome / Metatranscriptome102N
F103495Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307343_101008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.2735Open in IMG/M
Ga0307343_102117Not Available2005Open in IMG/M
Ga0307343_106930Not Available1141Open in IMG/M
Ga0307343_107982Not Available1060Open in IMG/M
Ga0307343_109705All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon948Open in IMG/M
Ga0307343_113846Not Available768Open in IMG/M
Ga0307343_114056All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003761Open in IMG/M
Ga0307343_115716Not Available708Open in IMG/M
Ga0307343_117543All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon661Open in IMG/M
Ga0307343_117762Not Available656Open in IMG/M
Ga0307343_121706All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium579Open in IMG/M
Ga0307343_123640Not Available549Open in IMG/M
Ga0307343_127604All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307343_101008Ga0307343_1010083F020914MAIYQKYGFAIDQILSEDQALPTYPQPGDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILITQGVQSDVSWASGEMICQFNIPAKLIGSARYLKLTYVTSANESAEKVEAFSVRR
Ga0307343_101008Ga0307343_1010085F067770MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQ
Ga0307343_102117Ga0307343_1021174F047076MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNNVNQYEDLNNFRELDIVKIDSVKDTSRDDVYWEVRHRKLLIYDSNKELITNETVGNHNLEIEYWESISGAITPFPTNTVTENDPNVIEEWNKSIPSISDVEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0307343_106930Ga0307343_1069303F101222DSKMSVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELNEKVSDIMECSIQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEVKNGKYIK
Ga0307343_107982Ga0307343_1079821F059033MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNVPSFGYEKAFKGFHQYAKDLGQVIAQKGATTVYCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPI
Ga0307343_109705Ga0307343_1097052F072475MSESFASRFMSPDEKTAMVARDPQSAQALTNAPRMGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESISKHHTDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP
Ga0307343_113846Ga0307343_1138461F070165MRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307343_114056Ga0307343_1140561F077342MARTLNEFVSSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIDQVFEISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHVAENLDSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAKEQRREILNPKRIF
Ga0307343_115716Ga0307343_1157161F062800YQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307343_116171Ga0307343_1161712F020914MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLK
Ga0307343_117543Ga0307343_1175432F103495DSGLLYMIFSTLLTVGIGFIVGKGVSFKEIQDIIKVVDESYKDGYISPEEAQKIYEEITDVIGQDWYIRLFKLFKR
Ga0307343_117762Ga0307343_1177621F025291HSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMSIVYNEFKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307343_121706Ga0307343_1217061F059998INTTMDDLEFISDLALLELAKLNPTLSGQPLTEKAKKYFLHEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVSFQDVIREIAGEMFELPEKKTTVGVMTQDEYISAMRAATTPEQQIELMNAWTEQQKRK
Ga0307343_123640Ga0307343_1236402F040648LLEIEPMLDTAREGVAALETATTLIHIPTREMAKIQTAITKMREAAVYIENRARNLPVRSNATTKSALKDALKNASQEQIERAYAILSGQEAVEDVPGEGDEE
Ga0307343_127604Ga0307343_1276041F039694ALAATGVQRESRAGRQAQMESNIVETMRRYFQIDTGKTKGDLEYTILNSVKRYFEGKLSEKQR
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