Basic Information | |
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IMG/M Taxon OID | 3300029661 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133139 | Gp0283893 | Ga0245258 |
Sample Name | Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37207R1 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 125901868 |
Sequencing Scaffolds | 14 |
Novel Protein Genes | 16 |
Associated Families | 16 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 9 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | United Kingdom: London | |||||||
Coordinates | Lat. (o) | 51.5 | Long. (o) | -0.12 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039147 | Metagenome | 164 | N |
F042910 | Metagenome | 157 | N |
F058154 | Metagenome | 135 | N |
F068941 | Metagenome | 124 | N |
F073573 | Metagenome | 120 | N |
F073574 | Metagenome | 120 | N |
F074899 | Metagenome / Metatranscriptome | 119 | N |
F075480 | Metagenome | 119 | N |
F082714 | Metagenome | 113 | N |
F087213 | Metagenome | 110 | N |
F089005 | Metagenome | 109 | N |
F091068 | Metagenome | 108 | N |
F092228 | Metagenome | 107 | N |
F099451 | Metagenome | 103 | N |
F101191 | Metagenome | 102 | N |
F101192 | Metagenome | 102 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0245258_100197 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 115401 | Open in IMG/M |
Ga0245258_100262 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 93027 | Open in IMG/M |
Ga0245258_100479 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 50783 | Open in IMG/M |
Ga0245258_100515 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 46663 | Open in IMG/M |
Ga0245258_100586 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 40304 | Open in IMG/M |
Ga0245258_100675 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 33935 | Open in IMG/M |
Ga0245258_100828 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 26237 | Open in IMG/M |
Ga0245258_100980 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 21233 | Open in IMG/M |
Ga0245258_101290 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii | 14170 | Open in IMG/M |
Ga0245258_101299 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 14043 | Open in IMG/M |
Ga0245258_101400 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 12746 | Open in IMG/M |
Ga0245258_101467 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 12088 | Open in IMG/M |
Ga0245258_107642 | Not Available | 1361 | Open in IMG/M |
Ga0245258_113859 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. MSJ-31 | 722 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0245258_100197 | Ga0245258_10019713 | F092228 | MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEYKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGLANLWVKGYLIDQLAIS |
Ga0245258_100262 | Ga0245258_10026276 | F073574 | MLLPAAVRPYAADVDDTASRVRCAIVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDAVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQLRLTFEYPEAEELAAFANPDDMFTWVWVTMRCTRCHAVFRGDLECD |
Ga0245258_100479 | Ga0245258_10047934 | F058154 | MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGAGAFVRVPVPAQSRLRYQPYLLPPEDASRHDVTLYTLCPLLYGGTLAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDARKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKTIEEKAARIES |
Ga0245258_100515 | Ga0245258_1005152 | F082714 | MAVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQLRAVIETLRKAVEIRSVEAVERKTLARWQF |
Ga0245258_100586 | Ga0245258_10058610 | F075480 | MNKTKQEKWQRAYGDTPDSFRQRVASALPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLAPSGISWAEWAEQNGKTLVPIGMEAAPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSAGFQVDLTEADTSHLKSCEVQLECRVGVFGKDGKATQWQKEILTATITFK |
Ga0245258_100675 | Ga0245258_1006755 | F091068 | MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMEPAKEEQTANVPRIDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGRRMLRVTSIGLPADEAVLVAQSVKKIFAE |
Ga0245258_100828 | Ga0245258_1008286 | F087213 | MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIDIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV |
Ga0245258_100980 | Ga0245258_10098018 | F039147 | MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQESGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRTSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVDIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILSQETLAKSAVNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ |
Ga0245258_101290 | Ga0245258_10129015 | F089005 | LTKSKQRSIIALALLRLVTSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQE |
Ga0245258_101299 | Ga0245258_1012992 | F101192 | MTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLARTAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG |
Ga0245258_101299 | Ga0245258_1012995 | F073573 | MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVHIRPRGGEIEALPRVMLSVYSEGVLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA |
Ga0245258_101400 | Ga0245258_10140011 | F042910 | LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTANRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPAMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC |
Ga0245258_101400 | Ga0245258_1014009 | F101191 | LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTMRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGKLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA |
Ga0245258_101467 | Ga0245258_1014678 | F068941 | MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNS |
Ga0245258_107642 | Ga0245258_1076423 | F099451 | MEVKNVGQLRKIIENLSDDYEIEMRVSRKLSDEELKECRYPYPYDTEYLTLEFDDIGVYDKVLCLGVTSKINQHSVKEKGD |
Ga0245258_113859 | Ga0245258_1138592 | F074899 | MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGGSNPPSSSNIFRLNRKV |
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