NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029672

3300029672: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-47_Run3



Overview

Basic Information
IMG/M Taxon OID3300029672 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133112 | Gp0282501 | Ga0243361
Sample NameHuman fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-47_Run3
Sequencing StatusPermanent Draft
Sequencing CenterZhejiang University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size126457409
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051936Metagenome143N
F062845Metagenome130N
F090515Metagenome108N
F099451Metagenome103N
F101193Metagenome102N
F102166Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243361_100442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii36345Open in IMG/M
Ga0243361_108928All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides1996Open in IMG/M
Ga0243361_110487All Organisms → cellular organisms → Bacteria1636Open in IMG/M
Ga0243361_112581All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1295Open in IMG/M
Ga0243361_118205Not Available846Open in IMG/M
Ga0243361_120581All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales746Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243361_100442Ga0243361_10044221F062845MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDGLLNGVPSRACT
Ga0243361_108928Ga0243361_1089281F051936MKQEGTGQVLFFLLAPRGKAFGFSGLSETAVMTPVIINFSL
Ga0243361_110487Ga0243361_1104871F099451MAIDKIKTVGQLRKVIESLSDDYEIEMRIRRKLSDDEIRELHNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKNE
Ga0243361_112581Ga0243361_1125811F102166MKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYCIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEAMEDYITEIANGESADNVFAMWQADIGAV
Ga0243361_118205Ga0243361_1182051F090515MITCCKVGPKTALQGTAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS
Ga0243361_120581Ga0243361_1205812F101193MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAAAVLVPIELVIFVVCIFFRNSMNDAIGWFAAYLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
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