NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029702

3300029702: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37293



Overview

Basic Information
IMG/M Taxon OID3300029702 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283900 | Ga0245265
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37293
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size198498295
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F039147Metagenome164N
F042910Metagenome157N
F047126Metagenome150N
F050793Metagenome145N
F066905Metagenome126Y
F068855Metagenome124N
F081354Metagenome114Y
F092227Metagenome107N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245265_100044All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158255594Open in IMG/M
Ga0245265_100553All Organisms → cellular organisms → Bacteria55466Open in IMG/M
Ga0245265_100738All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales44817Open in IMG/M
Ga0245265_101276All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella27660Open in IMG/M
Ga0245265_101656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales21673Open in IMG/M
Ga0245265_106574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3967Open in IMG/M
Ga0245265_112580Not Available1817Open in IMG/M
Ga0245265_116234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1360Open in IMG/M
Ga0245265_122042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium966Open in IMG/M
Ga0245265_122338All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales951Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245265_100044Ga0245265_100044154F068855VPTVEAQGPQVRKSLAPQWLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0245265_100553Ga0245265_10055342F042910LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTASRIGGGQHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTIAPGAAVRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245265_100738Ga0245265_10073814F039147MRARRLLILLMMLLLLPQAQAERLPLYTRPNNVDEAMPFQLRPTELSICSVTRAMGGVVVLANDNNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLETDEVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGVYRDAVTRDGKIYALPINAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNAELVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVRDYEKTLTELRRQQENAHVWKKQGIQERIDEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245265_101276Ga0245265_1012769F099269MRRPPFFVHGVLVSVQVGELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0245265_101656Ga0245265_10165616F050793MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGVWENDEQDEVFPTLADVREYATQEGYEPMAVDFETMTDEEFQQFLDRSRI
Ga0245265_106574Ga0245265_1065741F047126QTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRHFHILSKKLQKTC
Ga0245265_112580Ga0245265_1125803F066905GCNNGGFLGNLFGGCGCGDNSMLFFILIFLILFCGCGNSCCNR
Ga0245265_116234Ga0245265_1162341F092227YQRRPFGPMNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0245265_122042Ga0245265_1220422F081354LVRENQQSSAHNFVKDFSSIFLKSSRRSPLKKGAATENPLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0245265_122338Ga0245265_1223383F013656MDKKIYKEPIKSETETTINVLYGENKIVIYTNKVSLQRKLNRVLGKPSKEYKIKRSISGSSWDISLNDKSKIQKLILKGNIYEL
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