NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029756

3300029756: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_5_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029756 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133095 | Gp0281956 | Ga0242840
Sample NameHuman feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_5_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size164306255
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059106Metagenome134N
F070093Metagenome123N
F093883Metagenome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242840_100045All Organisms → Viruses → Duplodnaviria → Heunggongvirae153702Open in IMG/M
Ga0242840_100797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae31622Open in IMG/M
Ga0242840_125591All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales921Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242840_100045Ga0242840_1000451F093883MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKE
Ga0242840_100797Ga0242840_10079744F070093FLRGKIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0242840_125591Ga0242840_1255913F059106VILLQKFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV

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