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Sample 3300029765
3300029765: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_10_stool_1
Overview
Basic Information
IMG/M Taxon OID 3300029765 Open in IMG/M GOLD Reference Gs0133117 | Gp0283003 | Ga0243842 Sample Name Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 050_3_10_stool_1 Sequencing Status Permanent Draft Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine Published? N Use Policy Open
Dataset Contents
Total Genome Size 186132733 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa Type Host-Associated Taxonomy Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: Baltimore Coordinates Lat. (o ) 39.28846264 Long. (o ) -76.62594594 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0243842_100075 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis 190162 Open in IMG/M Ga0243842_100798 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae 38006 Open in IMG/M Ga0243842_102051 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii 13125 Open in IMG/M Ga0243842_104140 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes 5719 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0243842_100075 Ga0243842_100075231 F059106 ILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV Ga0243842_100798 Ga0243842_1007981 F071325 LLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLVFEELLSCAAAYL Ga0243842_102051 Ga0243842_10205115 F089005 LTKSKQRSIIVLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQEL Ga0243842_104140 Ga0243842_1041401 F097493 HMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDITFEQPTSEQLSQIQSKTFDSMSDMKQYVQSVMNGELTQDEINAMLLLKIAEMEVAITNEQTTN
