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Sample 3300029804
3300029804: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-W_N
Overview
Basic Information
IMG/M Taxon OID 3300029804 Open in IMG/M GOLD Reference Gs0133410 | Gp0290866 | Ga0247696 Sample Name Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-4-W_N Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 39397789 Sequencing Scaffolds 3 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 1 Not Available 1 All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
Alternative Ecosystem Assignments
Environment Ontology (ENVO) terrestrial biome → hill → soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location USA: Arizona Coordinates Lat. (o ) 32.5789 Long. (o ) -110.8512 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F002636 Metagenome / Metatranscriptome 541 Y F045952 Metagenome 152 Y F070240 Metagenome 123 Y
Sequences
Scaffold ID Protein ID Family Sequence
Ga0247696_104286 Ga0247696_1042861 F045952 MKLTTSDEPPALTNGRVMPVIGSRTTTTPMLMKACSTSQAVMPAASRAPK Ga0247696_107393 Ga0247696_1073932 F070240 RLQILLGNAVVGCWKGTAMAACEGTGSGTWISFKGRRSGTLTWPAQSVGVTLTFQALVVTSGRSLRLRVPVRVQAP Ga0247696_114910 Ga0247696_1149101 F002636 LMVRPERSVVLTGASPVRVSAGAPGSRLQPGGEIRPSRAECQKPLKERGANQRAATRVNASSHVIVSAERCLRGPSRSCRGEGNRQHPGTERVLDLSGVESGGTLGKSSAEQERSYLAAKSGEDRGYKAGRLKSRGAGRKSEGFIVPAKACSKTRRREGALL
