NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029823

3300029823: Liquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-2-220-M



Overview

Basic Information
IMG/M Taxon OID3300029823 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121315 | Gp0152028 | Ga0134844
Sample NameLiquor fermentation pit mud microbial communities from Luzhou, China - Meta-4-2-220-M
Sequencing StatusPermanent Draft
Sequencing CenterChongqing University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size165797189
Sequencing Scaffolds6
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLiquor Fermentation Pit Mud Microbial Communities From Chongqing University, China
TypeEngineered
TaxonomyEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Fermentation Pit Mud → Liquor Fermentation Pit Mud Microbial Communities From Chongqing University, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Sediment (non-saline)

Location Information
LocationChina: Luzhou
CoordinatesLat. (o)28.88Long. (o)105.45Alt. (m)N/ADepth (m).01
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021959Metagenome / Metatranscriptome216Y
F028664Metagenome191Y
F042860Metagenome / Metatranscriptome157Y
F064746Metagenome / Metatranscriptome128N
F088752Metagenome / Metatranscriptome109N
F091648Metagenome / Metatranscriptome107Y
F091989Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134844_100260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia59649Open in IMG/M
Ga0134844_102399All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.11070Open in IMG/M
Ga0134844_102448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium10881Open in IMG/M
Ga0134844_107442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium3642Open in IMG/M
Ga0134844_119121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae1289Open in IMG/M
Ga0134844_119756Not Available1240Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134844_100260Ga0134844_10026033F021959LADQEVARLQEQIKTLFNDVTELKNDMKEIKDQLTNRLPNWATVLIAILTASVGWFAGR
Ga0134844_102399Ga0134844_1023991F064746MKKIIWIALILLLGVFAIGSMSGTSGNDGAKNVTIDGYTFEGDFDDKWISGYGDTKTYKPANLEDQFGIPIGAYDWTGTENYNAFYYDSGEPSGSITKYGWAHIFVLKPDEDMADSSDILKHATRLLINPKDHRNAVVAGDLTEK
Ga0134844_102399Ga0134844_10239913F091989MKLSAYARSIINVAKVNGYATDASKASDPLIRPFGEFDEQRASLRALQQTTIGLCWVNAEGKAVPFNETEFAGIQKEIAALQAKIDHNAAILEKLDAKVAELGIQEFSISKLKGQKERLRGQIAQIRSEESDALRSRWEAVVSLGGNRGTYDALPEVIEARAKAAVQIEPIEAEILALDRQIRDLESILSKFKR
Ga0134844_102448Ga0134844_1024488F091648MTENETKPEPSPLETVERNLKTALDAWTEEINVSELPKAMQRKHRVASDKLGALVYDVHQYITTERRVGRPSGGLTKTTVRNEIKNATPEQLAAIAKILGQKPEPETDVSPVSTDVENLEEVNEE
Ga0134844_107442Ga0134844_1074426F028664MKENSKILIGGQALRNLGSDRYTNDTDYLINDKSTRDAFITSDAVDYLNANGNKFFAEVWEQEQGNKQATPQSLFELKVYAFVQHCQNFNFAKADSCEYDLKFLVRNFNITESKIARKYITNGEYSEIVKIVRSVKF
Ga0134844_119121Ga0134844_1191211F042860IKMAGFTREEILKRIEIEDTRIANADRNIEGLILQKNKSLDEQARLFALLETLPTEEPEAGI
Ga0134844_119756Ga0134844_1197563F088752MKGLQSVYNQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNTKMKEKEAYKLYFDEAYKYTNFYEEGDE
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