NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029836

3300029836: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029836 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116197 | Gp0321312 | Ga0307325
Sample NameMetatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31984225
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae1
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin2111
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA1041
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin2311
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin0031

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)44.11Long. (o)-88.23Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017318Metagenome / Metatranscriptome241Y
F020914Metagenome / Metatranscriptome221N
F022205Metatranscriptome215Y
F024821Metagenome / Metatranscriptome204Y
F025291Metagenome / Metatranscriptome202N
F029768Metagenome / Metatranscriptome187N
F031111Metagenome / Metatranscriptome183N
F051952Metatranscriptome143N
F052016Metagenome / Metatranscriptome143N
F059033Metagenome / Metatranscriptome134N
F068879Metagenome / Metatranscriptome124N
F070158Metagenome / Metatranscriptome123N
F070165Metagenome / Metatranscriptome123N
F070166Metatranscriptome123N
F077342Metagenome / Metatranscriptome117N
F082734Metagenome / Metatranscriptome113N
F099361Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307325_100286All Organisms → cellular organisms → Bacteria3624Open in IMG/M
Ga0307325_101890Not Available1819Open in IMG/M
Ga0307325_102050All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae1761Open in IMG/M
Ga0307325_103438Not Available1390Open in IMG/M
Ga0307325_104962Not Available1161Open in IMG/M
Ga0307325_109526All Organisms → Viruses → environmental samples → uncultured virus804Open in IMG/M
Ga0307325_110609Not Available756Open in IMG/M
Ga0307325_111356Not Available727Open in IMG/M
Ga0307325_112248Not Available695Open in IMG/M
Ga0307325_112579All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211683Open in IMG/M
Ga0307325_113247All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104662Open in IMG/M
Ga0307325_113586Not Available652Open in IMG/M
Ga0307325_116359Not Available585Open in IMG/M
Ga0307325_118745All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaU1.Bin231540Open in IMG/M
Ga0307325_120343All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003516Open in IMG/M
Ga0307325_120623Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307325_100286Ga0307325_1002861F068879NRPVYVIGAPWRDNRVTKEEGFVAGATDCPGYRRGLPPGVTAFANARINK
Ga0307325_101890Ga0307325_1018901F082734LFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN
Ga0307325_102050Ga0307325_1020502F024821ESSTRERYLRTLMRYQEQHGREKASAIQERFWKDRERVVSESAEEIDWFPSWKKNQVLESLLEKTYRDLIREMELEGLP
Ga0307325_103438Ga0307325_1034383F070165MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPA
Ga0307325_104962Ga0307325_1049621F099361KMNIKNTDSISFLIANSGNQKIYHPVSEFKADILADVEADKTLQDTIIQGVLDNVAAPILATESTITENSNDPGIVIELTKNTFIEGDSENAGNWIIDFGATDLILNTITKVSATEMRITTTGTAEEGTIRILALKDCFDAPIVDSNVLEIEVRTT
Ga0307325_108815Ga0307325_1088152F020914MAIYQKYGFAIDQILSEDQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGATDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSV
Ga0307325_109526Ga0307325_1095261F017318YDISCDGINPSVGTWNFSLNDLPSYTEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVDVQFNSAIDPVGNTVTNVSDVLQYRTLKGTAINKIHKRSLVPAYLMDGIVPCACYISCTSPSSNLWGVVYGIAPTGTAMLFKSRAKFYLSFVQSR
Ga0307325_110609Ga0307325_1106091F070166FLVSKIAYGKDFSLIELAALFHNQLWLQAKCSTDVQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQKMEAQLRNSIFTTWRKPQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTNKEIISRIKRTIQVKEAIKRIDPNWRNTQIAEASGGKVIPKKVG
Ga0307325_111356Ga0307325_1113561F025291KASKNKQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307325_112248Ga0307325_1122481F025291SAWRVITYNYHLGDHSSTGLYTLNVGADQRYMSFQTLLSTDEFQNMSVVYNEYKIHKAVFTSLPTTNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307325_112579Ga0307325_1125791F031111RRKKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFS
Ga0307325_113247Ga0307325_1132471F070158YYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKH
Ga0307325_113586Ga0307325_1135862F059033MAITTANLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPVAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFD
Ga0307325_116359Ga0307325_1163591F051952PDHFTSTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVSLEETCILFLSFEKMVQKMSQHEAYRAKYGSDVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNF
Ga0307325_118206Ga0307325_1182061F029768LDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLQFMERATEKMNGILQETESKIEQAMKEIAQEQEK
Ga0307325_118745Ga0307325_1187451F052016PHGAGGRGRRKGAAMSDRISVVFSGTNKNFLYNCEIPISMLPRTGERIRLSIPGHSDIRCYVEDMEWQYAELEKRIDISIVARVKMLRED
Ga0307325_120343Ga0307325_1203431F077342MARTLNEFIVSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISKQYYLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLT
Ga0307325_120623Ga0307325_1206231F022205PTRPHAVEVRFAHINPVGVRFRVLAGNNEEVYVSPALVAGPAPQVFRATLPRNTDFALYGGTQIVMDFAGPATYAIRLIMAHKENSA
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Biomedical Sciences Research Center "Alexander Fleming"
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