Sample 3300029842

3300029842: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35636

Overview

Basic Information
IMG/M Taxon OID	3300029842 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283908 \| Ga0245273
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35636
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	216406362
Sequencing Scaffolds	16
Novel Protein Genes	27
Associated Families	27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042095	Metagenome	159	N
F043945	Metagenome	155	N
F050793	Metagenome	145	N
F051935	Metagenome	143	N
F055739	Metagenome	138	N
F056682	Metagenome	137	Y
F058555	Metagenome	135	N
F059982	Metagenome	133	N
F064725	Metagenome	128	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F074964	Metagenome	119	N
F075481	Metagenome	119	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F090484	Metagenome	108	N
F090514	Metagenome	108	N
F092228	Metagenome	107	N
F099406	Metagenome	103	N
F101192	Metagenome	102	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245273_100020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	359655	Open in IMG/M
Ga0245273_100490	Not Available	57212	Open in IMG/M
Ga0245273_100828	Not Available	35462	Open in IMG/M
Ga0245273_101371	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	21264	Open in IMG/M
Ga0245273_101846	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	15697	Open in IMG/M
Ga0245273_101945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14875	Open in IMG/M
Ga0245273_105198	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6110	Open in IMG/M
Ga0245273_106560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4846	Open in IMG/M
Ga0245273_106946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4578	Open in IMG/M
Ga0245273_106947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4578	Open in IMG/M
Ga0245273_107228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4406	Open in IMG/M
Ga0245273_108748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3628	Open in IMG/M
Ga0245273_110569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3009	Open in IMG/M
Ga0245273_119527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1567	Open in IMG/M
Ga0245273_119761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1545	Open in IMG/M
Ga0245273_155611	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245273_100020	Ga0245273_10002022	F092228	MKKKCTLVLISVLTVACIVSAYLLFLYNPSFNMVYDSDTDSYFNNSYLSYNDGTLVAADYRKTKVTSYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0245273_100490	Ga0245273_10049020	F099406	MAEVGYNSKFEGREVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSTYLDLSMFSGNSGTLDETSFGKVLDAYNNKITLGKLEGNYYSLDYFLKGGDFEGVFELKIVLVSFSDTNTGEGVSESDIEIQVGTYTVTQDKAYKVLNNMVTLSNTMMSYLRFMSKAPRVVTTLANLPKDTHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGNDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0245273_100490	Ga0245273_10049041	F090484	MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVNKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNISITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0245273_100490	Ga0245273_10049067	F074964	VLWVINLNIICLTIKIYWDMITKKNANKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLENKKSTKWLVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0245273_100828	Ga0245273_10082822	F106193	VGCNTCKEKALKAERERIERSMMNRASSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
Ga0245273_100828	Ga0245273_10082829	F075481	MMRLRISLRAIFCLGLSLSLSSCGSRRQVSEASIDSGLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSVGVNKTRNDIKDLDNKIDIKSKDVDDKKGSRWPIAWIVAGISMILLVLVYILNRIKIL
Ga0245273_100828	Ga0245273_1008283	F064725	VIYSNGYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGTGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKMV
Ga0245273_100828	Ga0245273_10082830	F089590	MTLVMDNKGMLDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLVVLLANFIARLIQSARRWKVRRSRKRRFSLYRWFREVRLVGILKEFFLSCFIVMTLCVIYKTLSIEEDDASAILVVTKYGVYAALVAYVMLFLNTIGEAFPDTYIVKVFKSIFNRVNILKLFGSAKSLPDDAFDDIKKIADDEVKDKS
Ga0245273_100828	Ga0245273_10082832	F042095	MAKTLYKYEASLNKLVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNSFVELRSRKPGIANVDWGDGIKEQFPMTKVQGEDDYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQTCKMTAFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYINLRNVGARMTAMPKAITSKTEVYYLSMFNMLDLRDIESSGIRNIKNMKNLQTLKLSSCYLDRYIKEFNDLPKLTSLDITQGPSDMWNYFDINTLPFFEVDKINPNITDFIFLDDWMNGERRTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDTIYPTENQRPSGMEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA
Ga0245273_100828	Ga0245273_10082838	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEAADFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDVDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
Ga0245273_100828	Ga0245273_10082839	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKAKKVKDIKKKDDVEEGDKVKEE
Ga0245273_101371	Ga0245273_10137124	F102167	MDINQIKKYLPAGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTAFSFHDKDMDKLRMLIGNAIMAVGLRNNTLKGDGNTAIK
Ga0245273_101371	Ga0245273_10137128	F083452	MSGRVKIKSKDKDKKPKIDVFKIIENRFKNMNELRDLIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0245273_101371	Ga0245273_1013719	F058555	MGTKIVLLHKMKSNFDKILTERYTPRNIQAKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTKDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKSLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVPYLMNRLNIKLSKEGMMLISQRTVYRMIKDVLSMCCKTISDLYDEVKKNNGIVNTKDRKSVTIGHLRLSYRGTIMHIIIAEDYIRDVFLRVKGVEMSKAG
Ga0245273_101846	Ga0245273_10184610	F083451	MQKDQIMEEKDVLNLLMSRKDIRKLVEKSNECYSKMDFVGVMKYRKEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQMQYKAR
Ga0245273_101945	Ga0245273_1019455	F056682	MKMQSRAGKVANQSIRQGEIYSASFGTFPSKNRSTFPIQELRKNREDQEVL
Ga0245273_105198	Ga0245273_1051981	F085718	KVYLRNGKEARVLCDNGKGNSPMVVMIENDKADDYIILRYNETGRRNINGQSDLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRDIRGYIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
Ga0245273_106560	Ga0245273_1065603	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALYQQESTETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLIDVREYASQEGYEPMDVDFEQMTDEEFQQFLDRSR
Ga0245273_106946	Ga0245273_1069462	F051935	VRAGGRXXXXXXXXXXXGLTELKSKRLIQIVEDEIGEGWTLYQPNGREYEENFSSLVNLREMHFLPVVAWKGNQLRLLILRRQGDLWKVSEQNDCALMRYGWTLHNFSAMGYGNSDWADIYFYFLDENQKEWELALHLSDTNVSYFDMIYVPEKYGTIIVFYYDCELKFLFDAPFYFQLNYDIKPAESYSFDVKDFDLATCPLSMQEFLVPAVVTCGEEGAGLYIMVQQDIQPILTLVDGTAIEAIPQKWERDWTIVYYQGNYLFMKTEYVTFSE
Ga0245273_106947	Ga0245273_1069475	F055739	MTEQQLREKLQFAYGTMPDATRAAFEHSLTHHRAPETHRSIGLSRMMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALAERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWNEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGKAGFTLNLSGEKGTE
Ga0245273_107228	Ga0245273_1072285	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVWFDLDTGKGEMLEFALEDDENSHLLTDMPGFFRWSAESSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEF
Ga0245273_108748	Ga0245273_1087482	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASIFF
Ga0245273_110569	Ga0245273_1105693	F101192	MQTEPNDKEGRNMTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAALTSITPCGEDTIRRWVSERYQIALRFNRYDICLGVEEEIDG
Ga0245273_110569	Ga0245273_1105695	F073573	MPTIVSFYQRFPNEAPPLNLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVHIRPRGGEIEALPRVMLSVYSEGMPFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIRR
Ga0245273_119527	Ga0245273_1195271	F073574	MLLPAAVRPYAADVDDTASRVRCAIVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPNAAFQVRLTFEYPEAEEVSAFANPGDAFTWIWISMRCTRCHAVFRGNFAAD
Ga0245273_119761	Ga0245273_1197613	F059982	MRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDADPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHA
Ga0245273_155611	Ga0245273_1556111	F026592	PQGIAALAAQGSVATLTERSDETFPVGQFSSADRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029842: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35636

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences