NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030492

3300030492: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_2



Overview

Basic Information
IMG/M Taxon OID3300030492 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0134627 | Gp0312914 | Ga0302212
Sample NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size468735190
Sequencing Scaffolds30
Novel Protein Genes32
Associated Families31

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
Not Available15
All Organisms → cellular organisms → Bacteria → Acidobacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum → Desulfotomaculum nigrificans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella flava1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → fen → permafrost
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F004731Metagenome / Metatranscriptome426Y
F004753Metagenome / Metatranscriptome425Y
F005425Metagenome401Y
F005834Metagenome389Y
F007078Metagenome / Metatranscriptome358Y
F009089Metagenome / Metatranscriptome323Y
F019774Metagenome / Metatranscriptome227Y
F024148Metagenome / Metatranscriptome207Y
F024915Metagenome / Metatranscriptome204N
F028211Metagenome192Y
F029425Metagenome188Y
F029737Metagenome187Y
F030939Metagenome / Metatranscriptome184Y
F036794Metagenome / Metatranscriptome169Y
F039551Metagenome163Y
F039724Metagenome / Metatranscriptome163Y
F041519Metagenome159Y
F044047Metagenome / Metatranscriptome155Y
F048251Metagenome / Metatranscriptome148Y
F051409Metagenome / Metatranscriptome144Y
F059555Metagenome133Y
F060248Metagenome133Y
F064256Metagenome128Y
F065037Metagenome / Metatranscriptome128Y
F066960Metagenome / Metatranscriptome126Y
F076376Metagenome / Metatranscriptome118Y
F086021Metagenome111Y
F096161Metagenome105N
F096552Metagenome / Metatranscriptome104Y
F096680Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0302212_1055807All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1092Open in IMG/M
Ga0302212_1082576Not Available868Open in IMG/M
Ga0302212_1083790All Organisms → cellular organisms → Bacteria → Acidobacteria861Open in IMG/M
Ga0302212_1085009Not Available854Open in IMG/M
Ga0302212_1086974Not Available842Open in IMG/M
Ga0302212_1090142All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens825Open in IMG/M
Ga0302212_1096474Not Available792Open in IMG/M
Ga0302212_1100313All Organisms → cellular organisms → Bacteria → Acidobacteria774Open in IMG/M
Ga0302212_1107449All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium742Open in IMG/M
Ga0302212_1111276Not Available727Open in IMG/M
Ga0302212_1112295All Organisms → cellular organisms → Bacteria → Acidobacteria723Open in IMG/M
Ga0302212_1127937All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium669Open in IMG/M
Ga0302212_1130723All Organisms → cellular organisms → Bacteria → Acidobacteria660Open in IMG/M
Ga0302212_1140004All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Desulfotomaculum → Desulfotomaculum nigrificans634Open in IMG/M
Ga0302212_1140211Not Available634Open in IMG/M
Ga0302212_1152186Not Available604Open in IMG/M
Ga0302212_1162062All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella flava583Open in IMG/M
Ga0302212_1163932All Organisms → cellular organisms → Bacteria579Open in IMG/M
Ga0302212_1170618All Organisms → cellular organisms → Bacteria565Open in IMG/M
Ga0302212_1184102Not Available541Open in IMG/M
Ga0302212_1184309Not Available541Open in IMG/M
Ga0302212_1188018Not Available534Open in IMG/M
Ga0302212_1189734Not Available532Open in IMG/M
Ga0302212_1190909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium530Open in IMG/M
Ga0302212_1197820All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium519Open in IMG/M
Ga0302212_1200096Not Available516Open in IMG/M
Ga0302212_1201931Not Available513Open in IMG/M
Ga0302212_1207948Not Available504Open in IMG/M
Ga0302212_1209175Not Available503Open in IMG/M
Ga0302212_1210575All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0302212_1055807Ga0302212_10558071F007078VKESKRQSVRDSTARLQRAARERADEEARRIPWQRLYEVRNQYIDWQEFNFWARSILEVEERIIDWLAEILQNRCPGFLETEKALTPKAANTRPLVLRLEDWIEDHVFGFAKQEGSFFASTYYAVRDPRYQRAEVCWSECTEKWKKAKPIRYPSFEEWKGLAAQCDETAHLTARERKARASAKLVHPDRLTEAATRYMDCEALAYWARQALERGAEPPPEVVRELERRCPGYLDAGLKARAQDASAATQEWQRLMLWIADHFFQDAQTEGWFEAILIQVRSHPRAIR
Ga0302212_1070168Ga0302212_10701682F000065MSDITSKPVPKLHRAPQPPLSYPGATPDADRAKKPRLAEPSATGPDLNPGDRVEGLGDFGKPTGEFGTVEQSNEDDAIVKWDDD
Ga0302212_1082576Ga0302212_10825761F059555MNKVNYLALGAVGLIVISVLSPWVEVSISGGSDLNETSQLITVSGISIGYGIFGLLVALLGGVLAYKEYRWAFLAGIINFIDGYGYLHRWFGTGTHDSANYGDVTSRSSVDPKFGLYLFIVASLAFMFFTLKYYKSKK
Ga0302212_1083790Ga0302212_10837902F066960QEALDLASALIKLSRFSQLRPEPALTTGLVSGSSSIGVRVERLLDWRMADRRFVRTWLWTLLVVLTMIIGIAGNYGATLVVTHRLTELLVP
Ga0302212_1085009Ga0302212_10850092F096680METILPSVIFVSMIVVFGVDATRKRRDFLKKNKRA
Ga0302212_1086974Ga0302212_10869742F051409ETVAKVYRLDIATGKMEYWKTFGDHIASGITAVSGPHYSSDGSAYAYIYVQELSEAFVVKGLK
Ga0302212_1090142Ga0302212_10901421F028211MESIWMGIAPGRATTRVVALAGPHEPILKAQLRQDPAHPRALATLLEAIALWQGQPVRAALCADSPGFSSASTICREAFVDEGSALYTLVWAPAVAHRRRRHRLEGLGH
Ga0302212_1096474Ga0302212_10964742F044047EVGFEIVHMDLDSRYRLRRVLVEAIQRAPENRATEWDGERKG
Ga0302212_1100313Ga0302212_11003132F036794MKRTLLTLMLALMAAASIGCTSKNYVRQQTTPLINKTNELDD
Ga0302212_1107449Ga0302212_11074491F096161LDGFSQLNVSFSSEAGEVLTFLLTFCVKTKSKSGFGAEAPIK
Ga0302212_1111276Ga0302212_11112762F029737MTEFQFLAELEASQKNFEKLNYIFIRDMHKYIRKSTVYDSTFFKTILDFSANITLTAEWIKLLKKFNSDKYANILRFSPDFNYSTGVPDAIKKAVGSSN
Ga0302212_1112295Ga0302212_11122951F005425VNTIVRNLWIPLLAAILLLSACSKVSKPESNAAKTKPAATQPSAIKVETNDGGPLLLTTPAAQFQVRPDGYIQASLLKDGQKLSLDEPHAGAPASSDFARVAGKDVFFTLEFQSARVLEAVGKMGVGKRIEIPASPLGSSGTALQRVLALEVYDNFPNILLSAVEYKNTGASDIKIDASVNQRRRLSARIADAKAQPW
Ga0302212_1127937Ga0302212_11279371F009089EVVLELERRCPGYLDAGLKAPAQEASAATQEWQRLMLWIADHFFQDAQTEGWFDAILIQVRSHPRAIRTMEYADHCDEVWSSELPSPYPSFEDWRREADSYVDLDD
Ga0302212_1130723Ga0302212_11307231F005834YIESQTRRWDVPNGLTREQQRQLAEELLRRGVESRVISMEDERPLEALVTHTREELQKALAQIKEPVPAGYGDAFLAVQEKWKHSLNCWSAAPSIPARVLSNWYPIEEGIELYDATYDSTEHFWQAVKYHPDVTIKDLKELLTLLEQRDWSSWLARLDSDAKMYLPNAYAVEFLRHNLAKERLEWFQTELGRHALDPTEHARSAQQRGAASFRFSAFEE
Ga0302212_1140004Ga0302212_11400041F076376HLTELRAHVDGNFGFVRGLNEVMDAAGKVVAKVRFTDVFTYRDGRWQAILAHESLLGEAS
Ga0302212_1140211Ga0302212_11402113F039551MANRHRRSHDIELEFAFDRLHATKLEQVFAILVPNRERRIDESTGLKGESHEN
Ga0302212_1152186Ga0302212_11521861F039551MANRHRRSHEIQFEFAFDRLHATKLEQVFAILVPNRERRIDESTGLKGES
Ga0302212_1156054Ga0302212_11560541F086021MEQLYASQSQPVCEATLCVARDRVKVQSRRKYFFTDQIDQLIREIYLRNRDANARPGIRLLAKKVGMPHWALKKRARELGLARTK
Ga0302212_1162062Ga0302212_11620622F024915MRTELVPAADVRIGDYVLDERGAPAVVTSTRWQGVGGGVVSIALSNHPDRRVFSGRDLVARAVLFG
Ga0302212_1163932Ga0302212_11639321F004731LREPGASYRCHLPGGKHTCTEKDIEIIPLQKIVTVLPEDTFGISKILSDYRVETTFQTLGHRSTKVEISHYYSTTTLKAKLFNLIAKGKIARETQATLNAAKATIEATCRLG
Ga0302212_1170618Ga0302212_11706182F024148MLERIARHLASIVALVLLGGLLSATLVRLAPGFDSDAREM
Ga0302212_1184102Ga0302212_11841021F060248GRVYVDGKAIPGSRVIAKDGASYVEVKALAEALGVTVQSTANGLLINMLPKGDCDKSGPQGRRFSDEFRSDVAGVADDIESLRAVVLKKENVPLGPRFDAIDRKLTLSTTHVQTDADTAVYYALSYANNSLAIAYYKQSRGASGDEAPKDQLDSMMCAMESKFALMKGVLMPGGSCSVLR
Ga0302212_1184309Ga0302212_11843092F041519MRITSINRKESNEYNLELNTEPKLEQAVFDHFQLQAARDSRLKHIAFSKLENSGLILHTRGLVDSVNSDGLASLIEDLLTKAESIVARESSATKQEANL
Ga0302212_1188018Ga0302212_11880181F029425VKRKKQSASASADSAKDAVQVDETVRVPQHFINGKEFKGIKLGVYYKSVLMLAKALN
Ga0302212_1189734Ga0302212_11897341F064256SNVRHRQMRSAEASSQRRYSSFRRSIGVAASTHIEPKLVQKVGPPLAHAVTHGGTRLASFLVLRRGVFSGSRRTACFSPSAAISGPSTLVAWCGYQGHGQPLALKGEFSGSREASVACALRGRYSAFRLAVVHAFAWPLPNPSTRTSPPVKTGC
Ga0302212_1190909Ga0302212_11909091F096552MKKKNFFVAASVGLILLLAACSVPKPVPTPTPTQTAVVLPATGVEYYFVTNKLQVPTTQEQTQTFALNVDGDPQQQPDNKFGDLFTMLTSAVQGIELQSNLDKAVSTGQVVSPHVVKADDPLNDPSVSWAIFTGQKALSAPTFNGSDKFALDSAAPVNLPIIGS
Ga0302212_1197820Ga0302212_11978201F030939DMLKKYLLHEHRAVIVSFLDLLNIPHSEGMIEENFDYDTLTNERVQEAARSLLAMADRTGSELYLKYLVLQGGPWAGIEEVLPTGE
Ga0302212_1200096Ga0302212_12000961F019774VLLPVPVIAPGLIVQVPDEGRPFKTTLPVVAEHDKGCVIVPTTGAVGATGAGLISISADACDIHPGSLKIVKL
Ga0302212_1201931Ga0302212_12019311F048251MVAFAQVDNGSELRNSGTDYLRICSATPENQAKNYLAACNIWLTGVVDGLQAYNSNAKSLPLFDAPKITVGEASKLVAKFVANHPEKAQLPTAALVLGALAEKYPRKEA
Ga0302212_1207948Ga0302212_12079481F039724MARATLRTLNPRSGSLVARPKLAFVFGFLATAIAVLVALSWFHRNQVDEARSAQVILNQITVRTREINNLTWTALQEQNLTPEADTEMRAARQAMPTVVLAAHLHAYHTS
Ga0302212_1209175Ga0302212_12091751F004753NDQNDASEVRPPVPTELGSDAREQIRDWEFLFWAFLLFGLGRLAWLYLYQPENKGFHLGLSCGFVFCGVLGFLMRWVFSPRRK
Ga0302212_1210575Ga0302212_12105751F065037MRRVVVLALLAMVLPIAAWADGIDITNRYGTVSITQAGFVSKGSQLTSFNGIQASKGHALGSVSFTTGALVSGSILNGGVFSATGSTFVITGKGGGVPKGVIFSGTFVGPVNWTLTSSHGTFRSYTLSGK
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