Sample 3300030639

Basic Information
IMG/M Taxon OID	3300030639 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128996 \| Gp0213237 \| Ga0187745
Sample Name	Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	72885736
Sequencing Scaffolds	16
Novel Protein Genes	22
Associated Families	20

Dataset Contents

Total Genome Size

72885736

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis

Ecosystem Assignment (GOLD)
Name	Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Ecosystem Assignment (GOLD)

Name

Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7982	Long. (^o)	-77.8599	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Pennsylvania

Coordinates

Lat. (^o)

40.7982

Long. (^o)

-77.8599

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000076	Metatranscriptome	2620	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F002609	Metagenome / Metatranscriptome	543	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003866	Metagenome / Metatranscriptome	464	Y
F004725	Metagenome / Metatranscriptome	426	Y
F006424	Metagenome / Metatranscriptome	373	Y
F018723	Metagenome / Metatranscriptome	233	Y
F025035	Metagenome / Metatranscriptome	203	Y
F030772	Metagenome / Metatranscriptome	184	Y
F039148	Metatranscriptome	164	Y
F064387	Metatranscriptome	128	Y
F070138	Metatranscriptome	123	Y
F071266	Metatranscriptome	122	Y
F074901	Metatranscriptome	119	N
F076865	Metatranscriptome	117	Y
F088980	Metagenome / Metatranscriptome	109	Y
F093247	Metatranscriptome	106	Y
F104400	Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0187745_1000997	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	569	Open in IMG/M
Ga0187745_1006811	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	620	Open in IMG/M
Ga0187745_1009925	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	953	Open in IMG/M
Ga0187745_1012318	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	589	Open in IMG/M
Ga0187745_1028350	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	968	Open in IMG/M
Ga0187745_1030367	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	776	Open in IMG/M
Ga0187745_1035366	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	560	Open in IMG/M
Ga0187745_1050005	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	835	Open in IMG/M
Ga0187745_1050571	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	586	Open in IMG/M
Ga0187745_1056092	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	763	Open in IMG/M
Ga0187745_1067447	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	904	Open in IMG/M
Ga0187745_1077125	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	523	Open in IMG/M
Ga0187745_1079598	Not Available	616	Open in IMG/M
Ga0187745_1081590	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	554	Open in IMG/M
Ga0187745_1100543	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	556	Open in IMG/M
Ga0187745_1102130	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	627	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187745_1000997	Ga0187745_10009971	F004725	MATSAPLLGKEGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFP
Ga0187745_1001554	Ga0187745_10015541	F000023	DAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEAR
Ga0187745_1006811	Ga0187745_10068111	F088980	NTKGDGRFYQIELEVDGGTVADGGRFVWFNSGLQKVVEIGLSDDKIDLFMPQDLYQKSRKWAGDIAKMGNNNTRATMEALVFQNEKGEYECSFIECNRRPQVENEALALLQTDSKGNRRYTFAELMMRAKGYPAPTFAPAKDCSVVLHARWLHGNPDSDGKITYQAGNILGMTGPRLDYIKAELMAPGEISFTADPQLGKAVITAN
Ga0187745_1009925	Ga0187745_10099251	F002609	HNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRIKHNFFVLALWTCVWMLGTYPLGRPLSEGWRFMFTVSFFARVGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187745_1012318	Ga0187745_10123181	F039148	MMGKESKLNKDAYVNPTKAITNMNDRLRERKVDFQDLKDQFKRELKVEFPQASEERLQAMAQRLLNEKLLADEKMSRFPVQHESFRPNLSLTTQDRRYKEHFHPGTFVWNEAEKREAWTCCLNFDHGSRGCESRVVNPDSWSYQGFERASA
Ga0187745_1017292	Ga0187745_10172922	F104400	CAACLSAPVHQLYGYTVTTPELRTLPAAEQRERMVSFLKNQYLDTSNGRTRLSGLVPRDLFMRSMYVAVAYTMYSTVERTLVANWPQ
Ga0187745_1022915	Ga0187745_10229151	F006424	VIGSGGVNTVFVRDYFPEFGTDLVTTLSSLDVYNFSHFYLLVFLFMLF
Ga0187745_1027551	Ga0187745_10275511	F000241	SSCSRPAHFAMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRACSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187745_1028350	Ga0187745_10283501	F074901	APLLGEKKQAHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVAESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPHNLAFLFTKITPEQMMYMWNVLTFIFLTQCAMIVAYCAALAMFPGMWWTCTLCFGIPFSYVAIQNIYIDHDVMHGATFPVYEFQKFLTHPFADFFSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWSSNWYKYILTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVF
Ga0187745_1030367	Ga0187745_10303671	F030772	ALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVH
Ga0187745_1035366	Ga0187745_10353661	F004725	RSQTDLLQFSVAIVPMATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFP
Ga0187745_1043529	Ga0187745_10435291	F070138	LGQLPPDTMTAAEAKFYRDGYTHRTVLFDSMQDAKAEYGGALNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNIQAVINGPSYWKRVYYRENIAARFAREDAEAAERKAQAEIAEALSTGAGEAPPRRSQSESALQKPKTLDAKDTYAPIKENMKPFVEKQGKPRIRAMEAGERLHFFNTLHNKYHMKAGGKNLEWNVSKQTHRSTKNELNWILSNYFRTDSHAV
Ga0187745_1050005	Ga0187745_10500051	F064387	ENVTKLTRGTVKLCQVVGVFPGARMNDGTEEELDVDVELLNWEDCAQNLVSRVDKTWRQISSQKYRSILDLLGKKADHSVLRLLQISQQHIESQLDRVRHERELWKEVVDKRAQQPLQLALTLKDPHTGQPLPGPPGYGLPGLDGNPMAGPLSGRGLPGGMTSDPMQLGPSGQGMGPDQPKASPLAKRIARPQPGPPAPKAST
Ga0187745_1050571	Ga0187745_10505711	F018723	AREGHGAMTAEKTGDGKGNPAAKKGGKEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK
Ga0187745_1056092	Ga0187745_10560921	F071266	TKQMKAMGYAGSSNNPLARGVEGCCPGTSDAHAKLVVDDENKDKAELKLLNDLIAKWRVPGVIKVAPRKVIPDFSNRGHTGLSVEHVHYLATSFKEKGFQKRKGNEGHDIPVLVCEKTSSELGQKSIENWRSKLNDEKGFAPQEHYERLFRGEELYTSLGNGHFNQALNLFFRECPSIYSQEKYTIGQDRDLKEAVYQGVGAIVLKAEIPLRDRETISKLLNSKREFKWNVHPDGTLDITDAFEDTRTCKQFEA
Ga0187745_1067447	Ga0187745_10674471	F076865	KLAKRLQKIQMNPNFRHHPVWDYYEWILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0187745_1077125	Ga0187745_10771251	F003026	FTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187745_1079598	Ga0187745_10795981	F004725	MATSAPLLGKEGKKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSSDKMLSVQKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFFTQVLMVIGYCAALACFPDFWWTCTLCFGIPFAYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFFS
Ga0187745_1081590	Ga0187745_10815901	F003866	LKPPRAIEPADAFAKQHFSAMGDDGDVRLTTVSKDGEKLGNLIPAGSMSSAEGKGAIPGKWKIPGVQEPVELKVSGSSVKSVQQPFGNQPFLGEIEEGEKMLGLHVTLGGFPMKAWMKKEGQQTVLTFSNGGRWSKL
Ga0187745_1084510	Ga0187745_10845101	F000076	RQKGSNSQPSLAPPFPCWCTMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0187745_1100543	Ga0187745_11005431	F025035	MHGDTVYVKVMTGRYIGELDGTTKLEWVKARGTKKDKEHALTVEKMNNRDEPIKNGDVVMFVMPQGVHMDVLGSAVRARYYDPRGEWQKITIVKQDGGDVYSGDQIFLRGHQGEYLDANPLERAPDGEVKARWRDEGEWQVMWIEK
Ga0187745_1102130	Ga0187745_11021301	F093247	SSNMNESAPPLLQGGGILGRFENVRVKKSAKKTVTCDAATPEYLRHDFLKPQHLPIERVDEEANFIATSNINETRFHKGFHRRHQADIQQDAARLEHEAARDWARQERAAAQASAAHHLRDKCTFNILTGEGVGRECEFRHVGKKILNPYGSMQATFSEHDREERHRVKNSKHRFFEHPAPEKQVRAANLFNEGLQTTVRESAVLGYG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030639: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium from Pennsylvania, USA - 20_T1F_StrEL1 developmental time series (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences