Sample 3300030701

Basic Information
IMG/M Taxon OID	3300030701 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128996 \| Gp0213255 \| Ga0187763
Sample Name	Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 39_T1F_3236EL1 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 39_T1F_3236EL1 (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	63503478
Sequencing Scaffolds	14
Novel Protein Genes	19
Associated Families	18

Dataset Contents

Total Genome Size

63503478

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
Not Available	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

Not Available

Ecosystem Assignment (GOLD)
Name	Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Ecosystem Assignment (GOLD)

Name

Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7982	Long. (^o)	-77.8599	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Pennsylvania

Coordinates

Lat. (^o)

40.7982

Long. (^o)

-77.8599

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000085	Metagenome / Metatranscriptome	2467	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001051	Metatranscriptome	792	Y
F001313	Metatranscriptome	725	N
F002609	Metagenome / Metatranscriptome	543	Y
F003025	Metagenome / Metatranscriptome	512	Y
F003026	Metagenome / Metatranscriptome	512	Y
F003866	Metagenome / Metatranscriptome	464	Y
F004604	Metagenome / Metatranscriptome	431	Y
F004725	Metagenome / Metatranscriptome	426	Y
F005748	Metatranscriptome	391	Y
F018723	Metagenome / Metatranscriptome	233	Y
F048097	Metatranscriptome	148	Y
F070138	Metatranscriptome	123	Y
F074387	Metagenome / Metatranscriptome	119	N
F076865	Metatranscriptome	117	Y
F093247	Metatranscriptome	106	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0187763_101361	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	896	Open in IMG/M
Ga0187763_104755	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens	1005	Open in IMG/M
Ga0187763_112470	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	573	Open in IMG/M
Ga0187763_116814	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	667	Open in IMG/M
Ga0187763_119684	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	963	Open in IMG/M
Ga0187763_122734	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	567	Open in IMG/M
Ga0187763_123464	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	733	Open in IMG/M
Ga0187763_126563	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	995	Open in IMG/M
Ga0187763_132256	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	877	Open in IMG/M
Ga0187763_137613	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1072	Open in IMG/M
Ga0187763_155833	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	834	Open in IMG/M
Ga0187763_157491	Not Available	640	Open in IMG/M
Ga0187763_159625	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	559	Open in IMG/M
Ga0187763_187577	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	524	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187763_101361	Ga0187763_1013611	F093247	NMNESAPPLLQGGGILGRFENVRVKKSAKKTVTCDAATPEYLRHDFLKPQHLPIERVDEEANFIATSNINETRFHKGFHRRHQADIQQDAARLEHEAARDWARQERAAAQASAAHHLRDKCTFNILTGEGVGRECEFRHVGKKILNPYGSMQATFSEHDREERHRVKNSKHRFFEHPAPEKQVRAANLFNEGLQTTVRESAVLGYGRGGVSRTRARSCGVADNFAHLQALPPEPEYEAPHNGNASQIILG
Ga0187763_104755	Ga0187763_1047551	F000023	MTVTLEELEKRLAAIEKSLEADGEGGVLPSRKTGGDAQIMKKVATRLQDFESQITAQLANLQTDFDKKLSHVNRGAAATKPVDGAGGAAGLDTMAEDLDELKYDVGELKDLLGNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNK
Ga0187763_112470	Ga0187763_1124701	F003866	ARALFVRKAESSAAMGDDGDVRLTTVSKDGEKLGNLIPADSMTAAEGKSAIPGKWKIPGVQAPVELKVSGSSVKSVQQPFGNQPLLGEIEEGEKMLGLHITLGGFPMKAWMKKEGQQTVLTFSNGGRWSKL
Ga0187763_116814	Ga0187763_1168141	F048097	GNLSDLIFLALVGVTVQWLAYPATLFEDLGPLKAQFKAQSPDMEALIKFGAGLLLFLGMTFSAVSWNPVNGKMAGFGAFVTMGYFIYSVFKADSEVFLPRLFYAYAGVILLGALHIFAFPSNPLPPKSPEVKNNHGNFSDLIAISLLGVALSWYFYPEHLFQDLGPLKAQFRSHSADLATLIKFVAGLMVILSLMLSGVKWNPINGKLSGLGGFVAAGYTAY
Ga0187763_119684	Ga0187763_1196841	F001313	NLSEDMINLKNELTAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATVRHDITAVETNLEESKSKLAMDTDHAINALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDSRSKQQEVMEKIGDVEQQSELRSAESSRRLGALDLRMSGVQGGLGEQKRDILKLREEVNGLTVKSASHEVDIQKGSDAVKKMEKQRNLDGQNFKAQLDAIHDVLDTKVNEKPFEDVKHCVSSLTKGVVKFAQVVGVFPGPRFDDAEGGEGAEADVELLGWEESAETLSFRVDK
Ga0187763_122734	Ga0187763_1227341	F005748	RLRPYAAAAGAGAALPMTSLSAGFNKVGLSLLVLPWKALPMALALLPTAFVLPAAYRMIFQNSMRHTTASVFTVILYLVLSFMPVPCFENLFSELAFYGIALVSTFFMYTFFPEVLLNDFMFMHYLALFTIPLIPLAFAYMPMFAARSYLFL
Ga0187763_123464	Ga0187763_1234641	F004725	MATSAPLLGKAAHSKASIFYGADEYLEELKKKYEHDHEIAALKNALPGEGDPNAAGVAQSNDKMLSVQKNDENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFCTQVLMVIGYCAALATFPDYWWTCTLCFGVPFSYIAIQNIYIDHDVMHGATFPVYEWQRFLTHPFADFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYAL
Ga0187763_126563	Ga0187763_1265631	F002609	DFVSLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGSNWYKYLLTVPFIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWIPRRIKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSMMMQQGK
Ga0187763_132256	Ga0187763_1322561	F074387	YPVGMEADAENWKTTYEVMNEMRSFARSPYPPGTAIHQPGSRDHFGYSAPGPIASRLTNSELALTEDTDIPNPREHMAITRIQEPDDRRVFEKHDVDEMLRTYNSPVAKATLSPSKPQSLAKTFSLPTIARRSEAPPKLSERNPVIKKLEDAHFSYFVPKNMQREHKDRLNTAQLSKLKKANMISFPFTGEGTGFRSQGSGANWWPSGSYAQVPTSYRLQFGRPGFFRDTSPLMQSKFPQQAVSAAQEDLQ
Ga0187763_137613	Ga0187763_1376132	F003026	MFTVSVFARIGYSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNVMAMVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGK
Ga0187763_142672	Ga0187763_1426721	F000241	AMARPTLLPAVAVLAGVYSLASFCFVGSPQTPRACSRVPARVSAEYLERCGPKDSDVPFNAGAASGAGATVEFKKRPFGILRYQPGEGMKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVQSINGMNVQNEDFGKIMDMLDDEVADPRFSKSTALALDKQGGRMAEPVEAPLSVVFSSIPGYVYKGAQLTEDGQDGFAR
Ga0187763_142683	Ga0187763_1426831	F000023	NTKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSG
Ga0187763_146991	Ga0187763_1469911	F000085	SGSFLELLRAISLFRRCFRQGRPHGKARLPGSGSGSFAMVRALALALACSVARAQNWPACQEQNTVIRNAGKALFTNLQGYGAVIGCFLDDCMSSDKFVANEIESCAKVCFSLPECTHWVWGTEEGEQKCWFRTGDDGREAGEGWISGSKSCYPPGTTVLPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0187763_155239	Ga0187763_1552391	F070138	GYTHRTVLFDSMQDAKAEYGGALNFSAYRQGRDRQYLGVNGKNYYAKPWGNDSSNIQAVINGPSYWKRVYYRENIAARFAREDAEAAERKAQAEIAEALSTGAGEAPPRRSQSESALQKPKTLDAKDTYAPIKENMKPFVEKQGKPRIRAMEAGERLHFFNTLHNKYHMKAGGKNLEWNVSKQTHRSTKNELNWILSNYFRTDSHAVLKGAGHD
Ga0187763_155833	Ga0187763_1558331	F076865	ILHKSRYMKACERAGIPMIDTIHLEKGFNARDVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGEVFDEIRNFFCDGEWAYSVYTDGVDYEGFWEQPKGKLKEACKKLAIQTMEEVKKVHKWEGKRINSLLNRIDIGIIPDKSRKLGYRIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQAHEMLKRSLAAKRKMPSPQKVRQLLDVLEQRLKES
Ga0187763_157491	Ga0187763_1574911	F003025	LNDTGSLFALEWWMHFPDEGPGGKCNKEFWSKWVPRRVKHNSFVLCLWALVWLLGTYPLGRPLSEGWRFVFTVSFFARVGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHNIMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGSRAL
Ga0187763_158261	Ga0187763_1582611	F001051	TDTIPVLVTMVDVHNAKSQDMFYFCNVGSGGAATKVIGRSQTLSVEVGITTVLTLIVYECPEPVFTPETARCLGVLRVPVERLAERYSSGIFQQWFNLDTKTDPRMPAGDLQSLVTKFEQSYADSVNDIYQPKVCLSVIGSSFEVQQGSRSTFGIFVGEDVKTQAGPDLKALIASHKQQAAYIDALHEELRRLNTPSYRPLAASMAQPIGPATPGSFAVPRQGPAPGYGAFGAPVPSSMAPH
Ga0187763_159625	Ga0187763_1596251	F004604	AAAKESTPTKYTETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGLYGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK
Ga0187763_187577	Ga0187763_1875771	F018723	KEPFVQQFELKDVYPHFCDRKTKLLPLADVPYVLRAMGLTIYSEEEKSIREQVEKVDGMGKPVSMKTMQGWIEEHGSKYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKAETFDKIMKGGDSAVGTAIKGDSCPLDEFLNFLQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030701: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 39_T1F_3236EL1 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences