Sample 3300030703

Basic Information
IMG/M Taxon OID	3300030703 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128996 \| Gp0213243 \| Ga0187751
Sample Name	Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 27_T1F_3212KB8 (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 27_T1F_3212KB8 (Eukaryote Community Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	72595105
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	16

Dataset Contents

Total Genome Size

72595105

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456

All Organisms → cellular organisms → Eukaryota → Sar

Ecosystem Assignment (GOLD)
Name	Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Ecosystem Assignment (GOLD)

Name

Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7982	Long. (^o)	-77.8599	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Pennsylvania

Coordinates

Lat. (^o)

40.7982

Long. (^o)

-77.8599

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F001154	Metatranscriptome	763	Y
F001618	Metagenome / Metatranscriptome	662	Y
F003025	Metagenome / Metatranscriptome	512	Y
F010767	Metagenome / Metatranscriptome	299	Y
F015603	Metagenome / Metatranscriptome	253	Y
F018723	Metagenome / Metatranscriptome	233	Y
F031106	Metatranscriptome	183	Y
F034578	Metagenome / Metatranscriptome	174	Y
F043414	Metagenome / Metatranscriptome	156	Y
F054050	Metatranscriptome	140	Y
F080873	Metagenome / Metatranscriptome	114	N
F083686	Metagenome / Metatranscriptome	112	Y
F086596	Metatranscriptome	110	Y
F098651	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0187751_100390	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	550	Open in IMG/M
Ga0187751_105872	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	596	Open in IMG/M
Ga0187751_106673	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	511	Open in IMG/M
Ga0187751_110639	All Organisms → Viruses → Predicted Viral	1224	Open in IMG/M
Ga0187751_118307	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	663	Open in IMG/M
Ga0187751_139053	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	515	Open in IMG/M
Ga0187751_154666	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1070	Open in IMG/M
Ga0187751_159233	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	563	Open in IMG/M
Ga0187751_168746	All Organisms → cellular organisms → Eukaryota → Sar	553	Open in IMG/M
Ga0187751_174378	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1313	Open in IMG/M
Ga0187751_178891	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1299	Open in IMG/M
Ga0187751_183036	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	612	Open in IMG/M
Ga0187751_186714	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1147	Open in IMG/M
Ga0187751_188910	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1073	Open in IMG/M
Ga0187751_189802	All Organisms → cellular organisms → Eukaryota → Sar	1081	Open in IMG/M
Ga0187751_193784	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	516	Open in IMG/M
Ga0187751_194897	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1426	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187751_100390	Ga0187751_1003901	F001154	LVYHDVAWTAISPSSRIGPSVNGKRWPRRCPWCASRTLEIMVKVTVGKAEDPWCEIELTEEDVEDWKKGVDITEEKFKEVIQLPPITLENCHEREDGDLQWDEITFEEEVNGKYWHAVIMALHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0187751_105872	Ga0187751_1058721	F086596	SRALLQQTRVPRNCQSLVAPAMLRVLVFVLPLVNGSPALRGDGSGNYVDSVQCTGSGTLPTDPVCFSGSVLLETFDIQVLSYDGKMGTVNLKAEGAQNAQCDGAQFESQDNAITIENDQGCGLSKYDYTVRYCPDQDSLIVNLVKPFNVRVVLDSTSCNGEV
Ga0187751_106673	Ga0187751_1066731	F018723	MPDKAKDSGKKAKEPFTQQYDLKDVFPHFCDRKTKLLALQDVAYVLRAMGLTIYVDEEKGIREQLEKVDGMGKPVSLQTMQTWVEEHGKNYVKSYDDAYSAVGTLCHEGIIGDKSGRIQVPFLRHLVSEVGDKIKVDTFDKIM
Ga0187751_110639	Ga0187751_1106391	F015603	PFSKSEATEMSIKAFAGAVSLLHWAVAQDLSAACPHEDDINVEKHQEIRDGVSVYRDIRFNNTDRWYYMNENNVTVMNQPDQYRKLIINLEPCRGVVYLFVRKTRRCYPNPYSCIDLVPGQERREASGCQWRPDSWTHFLSEIDGSRDGSPTFFEVPLSATKYFISVYAPENSAYTLTVLSDIGAFPRPGANGRLTARQLSELQVQISWDAAGYIPTGISETKQYWVYSSMLKESDNRTNMAVFLRPDKIMNTVCGLQNNTDRQYTIIPASQCSNGKCNATIDGVITDKRYVFNVVAESYRGHKMAYSGLIMRTDWEVIRQAANDRTLRVVGAVSGSVLGMVIIIYFLMLKLYG
Ga0187751_118307	Ga0187751_1183071	F010767	MADHEQSMEDESTERLQQELSGVTPDGAMTPGCHCLEFDSWWNEGKQRRFVYIRYSITEGAFQMAIDEDSNLYHVPVAYGARTGEAVTVWDLHVGAEVDILGRMTTLQRCSQTTAEWNKYWANRLMLLRDRLAEELKKYDTRKNDPWLTWQKGRIESGGADLRLLMGQVAGLSAQLNEYRPRLAAQLSIPQEMLIIEGLPRKRKQE
Ga0187751_139053	Ga0187751_1390531	F086596	PLPSDTGRPVDLRLRIFLASEVMTRILSSLMLPFLVAGHSRSLRGDGDVYVDSVKCTGDKPLPMEPACFSGGMLVETFNIQVLSYNGQIGTVNLQAEGSQSAQCDGAEFVNQDNVITIANDKGCGLSDYDYNVRYCPDQDSLIVNLVKPFNVRVVLNSKTCPAGEV
Ga0187751_143062	Ga0187751_1430621	F000241	MARPVLLPVLGVVAAVYTASLAFVGTPQAAPRVSRVPARVSAEYLERLGPKDSDVPFDPSAATGPGASVEFKKRPFGILRYQPGQSLKGAMAMEIIPKSRYPGDPQGQAFASGVQSGWVVTSINGQNVQNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAEPAAAPLAVQFNSIPGYVYKGAELKEDGQDGFAR
Ga0187751_154666	Ga0187751_1546661	F083686	LTRSYDYYLRANKNPVAPMTPQPEQMQIVVASSCYCFASVGMLLFNKFAVQDFPLECCLVWAQLFFAASCLSLFAFPYIHVGSALDLFRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLVIERFYPEPLRISSFMLGSIFLMIAGGVMYVTQLPQENWQGIGWVFLNSGIAVVDRLLQRLLLSKEQCPVDISKTGITLINNLVGMLPVGIAAYATGEIEKLPLVYGTLSHWDKFYICMTCIIGLTISYTSIWAQSLISATSFLVMINANKFLIIGIEAFGMHSKALNHIQIFGASLTILGGVLYGRSRQAIELEAEERKSLLPRK
Ga0187751_159233	Ga0187751_1592331	F001618	LFWCPNCQSCSGLQQNMWRPDPGPCVAQVADWGEHPDDVEYMRQLKALPKKVLKRREVIAKDMDLKRVCLKQGKIHFSVACWNLSEYSRSGGLQDQASSLIHVFYESKDERKVLNAFSSAGIDLESVEAVPVDPNSSKKHEQQIMYAKECLYIQDENTWEEGKPLSPEEVKQRFQGRMK
Ga0187751_168746	Ga0187751_1687461	F031106	PTLASDEPEEVRKEKLLEMYREFAIELHTGMYLTQLTSNRDYADIHVQLMEDLTTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDKWYAAGTPLPNASPHAEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQAMRSLTPTFPPHHTQSRQCPTPRLVHDAMQRPIPSPPER
Ga0187751_174378	Ga0187751_1743781	F080873	QGSEDSAMKRVACLVACLILQVAVGIGSSNFLGSQKDHALMAEPEPIAEAAPNKPTKPLFGPEAYVLGIIAPGSFLLGFGAVVALRYHERYNPSSDGEVVERQPENLDEDVYGSGVATLVRDSFSLVDGKGDLALRISRLSSSLLLMVFVIALQVFVILQMQSLVASRAVTEIRQIYGRYEYVMYGAEMSHVYLTPNGFPRGLDKQYFDPSNFGRLTEDEQASACRIPFSQPQLLLPILFLWTLTIIADLRRCGDLFVRLILATPTITSMRDAVVESDGECEIIVGLTRPLKALLMSTCILPRYFIDVYLLWLGCRWLAATPSFGDLLLNAVALEFILLLKDTLYAGVVPDRNKRATQNTLIQPWQKTEPANYRVFLSSFLLILATVAWVLYYVYRFQAVLPDYKWDVAKVCASYVKAITSGKSS
Ga0187751_178891	Ga0187751_1788911	F000023	LWTVEHRTSSAESEIARNMATMEELEKRLAAIEKAMEEEAAGGAPRKAGSDAQVMKKVATRLQDFESQITAQLSNLQTDFDKKLSHVNRGASSTKPVDGAGGAAGLDTMAEDLDQLKYDVGELKDLLGNNKGEVNHIRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDIINLKNEMNTKLDTKVDNVAWKEANDDLDAAVKTVRDMVSSLRLDVDARRRKVDEILATVRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNG
Ga0187751_183036	Ga0187751_1830362	F098651	SMPAVRGRVGRKPLTEYQGWPKGIYPMSDGWVPPCYPKEEELIAYEERMNARKKATLVKRHLCMKEPQLQQLRKREFAQKSEYSMVAYGIAEGEYSGEGDDRSYFAIVFYEPSKKSKVERAFKSTGLELADYEQVVVDPDSKMEQEEKFMYAHGAGDVGECILGEYEYQVVPKGSPEYDDPWGPTHPEGRFWE
Ga0187751_186714	Ga0187751_1867141	F054050	VTTPSFQRKALARGPLPGGVAPQTVGSSMAASAQNSLETMTLKSSMTHPYLTSKFQVGSAKSDKINYTLAQKVFHSGDVPQEVLDSKRAVQKKKQPNILGTEKRDWNSSTIADQKIQKDQHKDLKRHLLEIRAGIHDEKILKPCKAHTDEQIIERYKFVVAMTGQGPIGKLSGKWFNAIDERGLPAHCVADHWNDWNASYSTHTKEDIQQSHAVVQQKDDRRKRMMTRDNKLNSEAYINPTQAIANMNDRLRERKIDFQDLKVQFKRELKVEFPQASEERLQAMAQRLLNEKLLADEKMARFPVQHESFRPNLSLTTQDRRYKVFHHPGTFVWNEAEKREAWTCCMNFDSNSRGCEFRMVNPDEWCYQGFERA
Ga0187751_188910	Ga0187751_1889101	F080873	APGTAFLSLAFVIFVRSMEAQSSERPERTAGEWHEDLEVVEREPENLDEDVYGAGIAALVRDSYSLVEGKGELVLRVSRLASSFLLMAFVVFLQIFVIKQMQALVASRAVTEIRQIYGRYEFVMYGADVTHNYLTPNGFPRGLDQQYFDMANFARLTDEEKDLACNIPFSQMQILVPILFIWTLTIVADLRRCGDLFVRLILSTPSITSMKDAVVEGEGECEIVVGLTKEVKALLALTCMIPRWIIDVYLLWLGCRWLCATPNFGDLLLNSVALEFIVLLKDTLFVGVVPDRNKRATQNTLIQPWQKKEPANYRVFLSAFLLVLVSFSWVFYYIYRFQAVLPDYRWDVHKVCQNYTA
Ga0187751_189802	Ga0187751_1898021	F003025	MGPNWYKYLLTVPWIPVIHFFGLNDTGALFAIEWWMSFPEEGAGGKCNKEFWSKWFPRRVKHNCVVWSLWLCVWLLGTWPLGRPFSEGWKFVLPVTCAARVGFSLAWMFITNFTHSLPWNKFLASDPGRNRPILHNLMALAVGGKHRWNEMLFHDVHHAFPNALGTLSQRGRFHGWKKVHDASVEVLYRGLWKPNGDEETEMQKQQKKRSLLMRQGQ
Ga0187751_193784	Ga0187751_1937841	F034578	LFLYVRATACVRSALQSIMASWFAADFGARFAISEEGKDFIQYCCKHINQAYNHKTALTRVTGSPWERVMLSQGPTATIAELLVVVCSSDANLVESSKLGGEQALHSLSRFGDSAAIRQQATMLLTKLAVVLKK
Ga0187751_194897	Ga0187751_1948971	F043414	WLKQLLLYATILRPPTMVKVVKKPATKSKKVSKNVKKATKSSSGAGGFKIRIGIVHGKVFDPIRQGTQDRNYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHIDFMTMEQMTEKRLAKNHVTFNFWGDMSIALMNGKPSLARRIQKIQKNPNTRHHPTWDYYEWVMHKSRYMKQCTKQGIPMIDTIHVENGFKARDVLKKIVAKGWEKFFVKPAYMSFFGAGVINGKTQDFLDNIEPLLQYEAENKQQKEFLVQPYVLKPNGNVFDEIRNFFIDGEWAYSVYTDGVDYEGFWEQPEGKLKEACKKLAIRTMEEVKKVHKWEGKPLNSLLNRIDIGVVPDKSKKEGWRIFVNEIEPQMTTWLGRYCPFVVQDKIAEVCVKQIREMLKRSLAAKRKMPSPEKVRKLLAILDQRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030703: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 27_T1F_3212KB8 (Eukaryote Community Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences