Sample 3300030757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300030757

3300030757: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4A (Eukaryote Community Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300030757 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0068071 \| Gp0125782 \| Ga0102768
Sample Name	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4A (Eukaryote Community Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	171053313
Sequencing Scaffolds	15
Novel Protein Genes	18
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → Rotaria sordida	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	2
Not Available	8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Dictyostelium → Dictyostelium discoideum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → needleleaf forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	New Mexico, USA
Coordinates	Lat. (^o)	35.8911	Long. (^o)	-106.2978	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003556	Metagenome / Metatranscriptome	479	Y
F007739	Metagenome / Metatranscriptome	345	Y
F010442	Metagenome / Metatranscriptome	303	Y
F012187	Metagenome / Metatranscriptome	282	Y
F015889	Metagenome / Metatranscriptome	251	Y
F018114	Metagenome / Metatranscriptome	236	Y
F019606	Metagenome / Metatranscriptome	228	Y
F023044	Metagenome / Metatranscriptome	211	Y
F024036	Metagenome / Metatranscriptome	207	Y
F030647	Metagenome / Metatranscriptome	184	N
F035138	Metagenome / Metatranscriptome	172	Y
F071788	Metagenome / Metatranscriptome	122	Y
F085201	Metagenome / Metatranscriptome	111	Y
F086396	Metagenome / Metatranscriptome	110	Y
F087439	Metagenome / Metatranscriptome	110	Y
F094693	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102768_1013348	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → Rotaria sordida	518	Open in IMG/M
Ga0102768_1018652	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	560	Open in IMG/M
Ga0102768_1022612	Not Available	1397	Open in IMG/M
Ga0102768_1029959	Not Available	595	Open in IMG/M
Ga0102768_1033413	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	582	Open in IMG/M
Ga0102768_1043228	Not Available	795	Open in IMG/M
Ga0102768_1127582	Not Available	578	Open in IMG/M
Ga0102768_1489390	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	613	Open in IMG/M
Ga0102768_1518216	Not Available	515	Open in IMG/M
Ga0102768_1527129	Not Available	504	Open in IMG/M
Ga0102768_1529603	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	530	Open in IMG/M
Ga0102768_1587383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
Ga0102768_1606412	Not Available	504	Open in IMG/M
Ga0102768_1635741	Not Available	627	Open in IMG/M
Ga0102768_1636236	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Dictyostelium → Dictyostelium discoideum	941	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102768_1013348	Ga0102768_10133481	F023044	ALASVLGGLSGLLGGRAGIDLGAIFSGFLADIQGAVSGIGQHVLNQGLASVLGGLGSLGGSRGVGDIFASLSSQIGAAVTAAQGALTGALGSLQQLGGNILDASKPHWEQLQEQLVGHGLNVLGSISETVNNLHGSITGGR
Ga0102768_1018491	Ga0102768_10184911	F023044	GNIFGSVQPVLDQLFQGLLSQLTGSLAGIFGGRAELGLGSIFGDFLASIQGQVVGIGQHLLNQGLGAVLGGLGNLGGSRGVGDIFASISQQISSAVSVAQGAVQGALGGLQSVGASLVDASKPHWQQLQEQLVGHGLNVLGSISETVNNLHGTITSGR
Ga0102768_1018652	Ga0102768_10186521	F003556	SDEDYMAGKLLSAAYEHRHIATLRTLLMETADQLSSSPYLDMRNQAMAYKYTAEELKAMTINAEVIDPDYFGSFLRRVYGVWESDLVQCYISVCDGILGFQRVNRVKNKNAPPLAPRIPRALWDTAFENIVTVDVSL
Ga0102768_1022612	Ga0102768_10226122	F010442	MMHSSFFASLLVAALASTIFADTTSSGNRQCPGGYDNGKQMNIGRYWYECRDGQVIPKGCLTPEDSRIDIDGTFDTNQYRMQCVMGQDGFLSLTYKACMHKGSEHDVGAQWDNGVAYFTCVKEGNNVRVITLGCVDQGKQMKLDDRVAKGDFIFQCKEATDGTPKMNKVGCMQEGRKYNIGETFEGPKWWYTCTDSGAKVVGCMYQGHRLVDGDHFTEGDMMYSCRVRADKTFFEPFACLQREENGASIERKVGCFWVEGQGSNAFEYTCKPDNNNLISKVQVKCVYRASQGNFKLEPGCVQQAGDIAVGCLQDSSSGKLTIQTYSPDQMGSLPGLHKC
Ga0102768_1029959	Ga0102768_10299592	F030647	EIETRLGCPVLNSDHVHLSDMTVYMTSSSVHLSFVIQHGGKIKPKIGPKVIHILLALEKLLILLKFTAFIETCFPIKSRSTTLR
Ga0102768_1033413	Ga0102768_10334131	F003556	LTYTSQDRTKVEKSFKEVAEGSGMSTEGVYHNVREKATFLRKRFVPSYRRTFPVPSFGRVVCKLPVRCNNNRAVSDEDYMAGKLLSAAYEHRHVARVRELLLQTAEQLSSKPFLDMRNQASSYKYTAGELKEMTVNAETINPDCFHEFLLKVYGIDEDGLVDCYAAVCDGILGFQRVNHHAKGKKDKHPPLAP
Ga0102768_1043228	Ga0102768_10432282	F018114	CIFEGAEHDVGSQWDDGVAFFTCVKEGENVRVITLGCQDQDKPLKLDERVAKGDFIYQCKKATDGTPRMNKVGCVHEGRKYNIGETYEGPKFWYTCTDGGSKIVGCMYESHRLRSGDHFTKDDMMYSCKVDDDRTDFVPFACLQREENGAAIERKVDCSWVEGHGSEAYEYTCKADSGKVAKVQTQCVYRAPQGVLKLQPGCVQLAETVAVGCRQDAESGRLQIETFSADQIDNLPGLRQ
Ga0102768_1127582	Ga0102768_11275822	F019606	VPRFKLLAKRKRVISGVLIRTGQKPGRGAKENAPRLYRMPCSSRACRLESEFLDGSLG
Ga0102768_1489390	Ga0102768_14893901	F024036	VNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILMTLLPIIYNXYNPYHKHIPTIPMQNSLIQTFAFIIFTLSIFCAASMLPCGRYYYEPEGGYVGNPXVKFSFQYIYLYMAXFIHHLDLIDHYIFQFFQTFIRKTLKTYKKYNYLFKNSISKFVTFGNIHKIYNKLIFKNINYSLNLKKKKKK
Ga0102768_1518216	Ga0102768_15182161	F085201	MPIFSKPHQKTIKLIINVKSDLKLEKERGDGIALYQEKYECYVQTSKYVAYGLGNLEKQVAIDLIKNGRDSELDRKDVVYDSDEQMEDRHYEKDEKIDALDTDLNWLPSQVIDVHPFKGVLIKYEGWSDKWNEWIPTWSPRLAKVGKFS
Ga0102768_1527129	Ga0102768_15271291	F007739	TKRAAKNKIDVVRFKIIPGDWGKAGSGWLTGLLSNRAERRGSGGRIHQFLWRYSRTVKMRMRDLAARGNEKLPRVE
Ga0102768_1529603	Ga0102768_15296031	F015889	ENVVCHSMLWTTTFVLCLLGIIFLFVGVIFSFWDMFQISDRRFVIPMLYFVGVVLMTAGLFDYGSRALINSHSSRCMLSAIVFGYVALPIAAFIAGRYSAYDRFVNNGHVHNGQKYVPASTNGN
Ga0102768_1587383	Ga0102768_15873832	F071788	QVSREAHVKPKQLLGYAAIAFVLFFVIKDPAGAAHIVSNIGNFLSSVARGFTDFFNSL
Ga0102768_1606412	Ga0102768_16064121	F094693	QVLPKVPITSTNVAPSWEVPLDILYKRQAAAKTDAEKESIKMMIDDMIEKRGHLETIIKKIVTRVSVSREHIDRLFLTRPQQLNNLECHHQLVKSFSRHCFDLGKNTYALKYAYVLANICEDGTMDTDNVIRTMRQVCKAVTIKERID
Ga0102768_1608810	Ga0102768_16088102	F086396	KKVIEDISKPHELKKTSGPPAESLSQTQAKVLIEVTKKPDLNHVDAPSTGLSAADKEAYIAEKKSRELYTVHTQ
Ga0102768_1618375	Ga0102768_16183751	F087439	TTHLTKVLPAMPTPPPNVQVRNAPDYATLERTLNGLGLTASMFQ
Ga0102768_1635741	Ga0102768_16357411	F035138	LAATPSPPTWPVAFSASILHTDRFGGMRFSRWFYDSGNMVERFDGLRMWQGEMYWIEDIRDYTSDVNTFMAFMQEEVSCFTGPVNGTMIKPNFNDFQYAGLSFVGFTKCNHWFLQNQNQGIQIQLWDDANTREIVRIDVVNENIGMAENWTFMEMDIGAQDSNLFVVDPNIAPICNSF
Ga0102768_1636236	Ga0102768_16362361	F012187	DSIVSAGVGPAWKAMSSTVEGLRPQIEPKIKELVDPIGKAEAELINKIKDAAMSVINPLLEKHVVPHLSKIMEIIQSPMTEAYDESYKQFDEQLNKFEMKPSKEELSKAFKTLDYYPRSWEMYHVTRKIDILYDPLWALNVIFTDIYPWSLIWRGHDELRSTMDNAIYTWESKVLKSCEGNDSALSEGKALADRMKMETMEDFKFDGRLKTVAWYCEIIKKIIMPPFDAAIIPACKEIISPISEAIPEPMKQFIDIEQLFDDLINGIIDDSIKTVVQSGQKSD

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