Sample 3300030826

3300030826: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T31 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300030826 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0134331 \| Gp0333298 \| Ga0315882
Sample Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T31 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	21249639
Sequencing Scaffolds	40
Novel Protein Genes	50
Associated Families	36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	4
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Aspergillus creber narnavirus 1	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	5
Not Available	14
All Organisms → Viruses → Riboviria	4
All Organisms → cellular organisms → Eukaryota	5
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	2
All Organisms → Viruses → Riboviria → Orthornavirae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Plant Litter Microbial Communities From East Loma Ridge, Irvine, California
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006377	Metagenome / Metatranscriptome	374	Y
F008406	Metatranscriptome	333	N
F009606	Metagenome / Metatranscriptome	315	Y
F010295	Metagenome / Metatranscriptome	305	Y
F014836	Metagenome / Metatranscriptome	259	Y
F015954	Metagenome / Metatranscriptome	250	Y
F018668	Metagenome / Metatranscriptome	233	Y
F021791	Metagenome / Metatranscriptome	217	Y
F022330	Metagenome / Metatranscriptome	214	Y
F023769	Metagenome / Metatranscriptome	208	Y
F025888	Metagenome / Metatranscriptome	199	N
F028052	Metatranscriptome	192	N
F028375	Metagenome / Metatranscriptome	191	Y
F030315	Metagenome / Metatranscriptome	185	Y
F030953	Metatranscriptome	183	N
F037504	Metagenome / Metatranscriptome	167	N
F038019	Metagenome / Metatranscriptome	166	Y
F042666	Metatranscriptome	157	N
F043722	Metagenome / Metatranscriptome	155	N
F045460	Metatranscriptome	152	N
F050069	Metagenome / Metatranscriptome	145	Y
F052301	Metagenome / Metatranscriptome	142	N
F066301	Metagenome / Metatranscriptome	126	N
F068314	Metagenome / Metatranscriptome	124	N
F070702	Metatranscriptome	122	N
F075502	Metatranscriptome	118	N
F078027	Metagenome / Metatranscriptome	116	Y
F080696	Metagenome / Metatranscriptome	114	Y
F080697	Metagenome / Metatranscriptome	114	Y
F089598	Metatranscriptome	108	N
F102187	Metagenome / Metatranscriptome	101	N
F102267	Metatranscriptome	101	N
F104142	Metatranscriptome	100	N
F104166	Metagenome / Metatranscriptome	100	Y
F104406	Metagenome / Metatranscriptome	100	Y
F105213	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0315882_100208	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	2326	Open in IMG/M
Ga0315882_100882	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Aspergillus creber narnavirus 1	1586	Open in IMG/M
Ga0315882_100901	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	1573	Open in IMG/M
Ga0315882_100934	Not Available	1557	Open in IMG/M
Ga0315882_101118	Not Available	1475	Open in IMG/M
Ga0315882_101226	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	1426	Open in IMG/M
Ga0315882_102459	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	1097	Open in IMG/M
Ga0315882_104070	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	904	Open in IMG/M
Ga0315882_104286	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	886	Open in IMG/M
Ga0315882_105015	All Organisms → Viruses → Riboviria	824	Open in IMG/M
Ga0315882_105593	All Organisms → Viruses → Riboviria	785	Open in IMG/M
Ga0315882_105799	Not Available	773	Open in IMG/M
Ga0315882_105971	Not Available	763	Open in IMG/M
Ga0315882_106033	All Organisms → cellular organisms → Eukaryota	761	Open in IMG/M
Ga0315882_106736	All Organisms → Viruses → Riboviria	726	Open in IMG/M
Ga0315882_107223	Not Available	704	Open in IMG/M
Ga0315882_107502	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	692	Open in IMG/M
Ga0315882_107688	Not Available	684	Open in IMG/M
Ga0315882_107939	All Organisms → cellular organisms → Eukaryota	676	Open in IMG/M
Ga0315882_108028	Not Available	673	Open in IMG/M
Ga0315882_108118	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	669	Open in IMG/M
Ga0315882_108585	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	654	Open in IMG/M
Ga0315882_108860	Not Available	644	Open in IMG/M
Ga0315882_109398	Not Available	628	Open in IMG/M
Ga0315882_109779	All Organisms → cellular organisms → Eukaryota → Opisthokonta	617	Open in IMG/M
Ga0315882_110363	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	602	Open in IMG/M
Ga0315882_110639	All Organisms → Viruses → Riboviria → Orthornavirae	595	Open in IMG/M
Ga0315882_110797	All Organisms → cellular organisms → Eukaryota	592	Open in IMG/M
Ga0315882_110992	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	587	Open in IMG/M
Ga0315882_111326	All Organisms → cellular organisms → Eukaryota	580	Open in IMG/M
Ga0315882_111335	Not Available	580	Open in IMG/M
Ga0315882_111533	All Organisms → cellular organisms → Eukaryota → Opisthokonta	575	Open in IMG/M
Ga0315882_112047	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	563	Open in IMG/M
Ga0315882_112158	Not Available	561	Open in IMG/M
Ga0315882_113263	Not Available	537	Open in IMG/M
Ga0315882_113742	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia	527	Open in IMG/M
Ga0315882_113849	Not Available	524	Open in IMG/M
Ga0315882_114015	All Organisms → cellular organisms → Eukaryota	521	Open in IMG/M
Ga0315882_114114	All Organisms → Viruses → Riboviria	519	Open in IMG/M
Ga0315882_114795	Not Available	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0315882_100208	Ga0315882_1002081	F066301	MSALRKLTSNHSSSRVAPVTRSVDNSSRGSTVKRCHACLRAERDTKETIHNGLLLIRVRYGLPYSELPDSNPGELSRFLSFLLLQGKERTSVAFPRRQRRGENGLCSLQRLCRRDRWGLAHSVSSIKRNLPAGCHLHTPSVRSQWEENVLSQPPPSSPEYLAHVRRVAARVFPAGWDRNYNDFVGRHVPNPTAREPKRSRADHLWAGRRDDFFNCATKESELSSTFFARYKEVQSAGKKRPLLIFDERVDLLAPMHSLMYHTLGKQDWLLCGPPTEERMTSVLVNDYQTSVDLVAATDGLRHDVAKALLDTLFFTSVKIPRSLRLLAEGSLSPVFQAEDGALKRVRQGQMMGSYLSFPLLCLQSYCAASWAAQFDSGARYIVNGDDCVISASRYVTVQDYPSGYRLNDDKTIRAMNVAEVNSTAYLRQGGKWREVRHLRRGGAPTDYCGMMHMAKAVTSAQCWVDAYSRCRIGRRWGFLPSQLGHQGYPAHLRESGLRVRRTYTPLPEPVVDRSFPEELLVITGRDPSPCEAEALRSSLWTHGRMGGLKRDVWNPSCGSVRRTYSYRKLKRVSALSFVWKRPAYKAENERGWFVVPATFQSDEERRGLDELALFRDNWDAGFISLCPLDI
Ga0315882_100882	Ga0315882_1008821	F104142	MQNANTVNNNTAKRASLPPALNPEQPALTQPWRDFVSRGFISKIELHFTGNATFVGFDLGPLVKTPEGQGRTALPAGMAKHFIVESGLWSPKQFGGKKPGDKKDGVQLPKKSLVPKDLKADETSNDALKARASAVAEALTDTVARGRIGSLKFMRKNVDTFEKWWAGAPAQMKTRLLMDGKHHASLTAADHSRFASVVTECPFRGPVPTPTEEEEEPEEAPRNGKAIASGAPSSPPKPAK
Ga0315882_100901	Ga0315882_1009011	F050069	ARYKAVMSAGKSRPLVIYDESVEILAPLHKVMECHLMKLPWRLVGPPTEKRISSVCAYPCQTSVDLVSATDNLSLEVTEAILGTLLRKSQKIPGPVCLRAFQSLRPIIDCGGEEKEVSHGQMMGSYLSFPLLSLHSYLAAKWALGEREGNVLVNGDDTLVSANVYLEASSYPSGYKLNNLKTIRSENVAEINSTAFLRGSKGKWREIRHLRRGGFLSDYPGMMHGASAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPKSFPAHAREVSMSNRIFTCLPVPPTEVSTLLSAVRRQLDPDETIAMFLHQWEHGREGGKKRDVFKPTVGGVRRTYAYRSVKIWSQLSYLGKLRALKVPARRKEEELRYLPADYVSKREDEILSELRTFGLQCFKDL
Ga0315882_100934	Ga0315882_1009342	F068314	MSAERNEQQTRSSGNAVGTSGARPRPALDPLSPALTQPFKDLVGKGIIAELSVKFTPMGVEIKGKASLKLAEVEGSGLNTTDYFPLALLSGVAEKGGLSFNPRDKKKSGGHGPAQVKPAKTLVPADLDGSLNEAALQNRINAIAKACGGGPLVGRVRSEGAFTGSETTSYHDWWDAAPAPLRALSLTEGKRRKELTSDHVGRLANLQCPFRGALEFEVSAGDEEEEVQTSSSKPAAPATGKQSPKK
Ga0315882_101042	Ga0315882_1010421	F030953	TVTEAILDALFFTSVKIPRTLRALAKSSLRPSFLGLGGEAKRISHGQMMGAYLSFPLLCIHSYCAASWAARDQVGARFLVNGDDTVISAGRAISVQDYPAGYRLNADKTIRAENVAELNSTVFLKSGGRWREVRHLRRGGAVADYPGMIHMAKAVMVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYIRERGLRVRRTWTALPEPTDVVVFPEELDRITGRDPTPVEAEALRVVMWKHGRWGGSKRDVFSPSCGKVRRSYHYRAQPCRSHLSFVGSGRPKLSPLGEKGAGYALVPSSFMSEEEMRGLADLEQFRRNWDRGFILSED
Ga0315882_101118	Ga0315882_1011181	F102267	QQRQETRTGGYAAGGPSPKARPALDPRVPVLVQPFKGLVENGVITELSVKFSSMGTEVKGKASQRLVDVEKSGLNTTDFFPVGRLLEVAEMGEDPVLRRPGKKGHKGAGGPAQVKPARSLCKEDFTLAPAALQQRANEIARACGGGPLVGRVRSAGRFDGTRTVSYREWWDSAGAELRALSLSEGKRFNTFTPEEMGVLTGLQCPFRGTLEFTVKEEDEEE
Ga0315882_101226	Ga0315882_1012261	F050069	AGKGEIFRRQCLTGKSIPVDEPVRARYKAVMSAGKSRPLVIYDESVEVLAPLHKTIESVLMKLPWRLVGPPTEKVISSACVYPCQTSVDLVSATDNLSLDVTEAILGTLLRKSRHIPGPVRLRAHQSLRPIIDCGGEEREVSHGQMMGSYLSFPLLCLHSYLAARWALAGREGTILVNGDDTLVSANVYLEASSYPRGYKLNDMKTIRSGSVAEINSTAFLKNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPRSYPAYERERSMSNRFFTCLPGPPTEASTSLLAVRRELDPDEKIAMYLHQWRYGREGGRKRDVYNPTVGCVRRTYAYRAVKPWSRLSYLGKLRSLKLTARREEEELRYLPADYVSKREDEILSELRRFGSSVFEDL
Ga0315882_101801	Ga0315882_1018011	F030953	PRTLRSFAKSSLRPSFEGLDGQEKRISHGQMMGAYLSFPLLCIHSYCAASWAARDEVGARFLVNGDDTVISAGRVISVQDYPPGYRLNADKTIRAENVAELNSTVFLRSGGKWREVRHLRRGGAVVDFPGMIHMAKAVMVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRAWTPLPEPSDDVEFPEELVRITGRDPTPVEAEALRVVMWTHGRWGGSKRDVFSPSCGKVRRSYRYRAQPCWSSLSFVGSGRPKLSPLREKGGEMSLVPASFISDEESRGIADLEQFRRNWDRGFIISDLEALDRDR
Ga0315882_102046	Ga0315882_1020462	F008406	MGSFLSFPLLCLQNRIAFLYAGESVGVDCSEFPCLINGDDILFRSGPHFSVHWMKTVANLSLEVEKTKTSVSPEFGSLNSTLCRRFGAFYRVVATVRMGMLRESESYDTLSKGFDDFIAGLKGSLRYRAAMAWFSWNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRQGPSLQKIPSLKVENGLSLTCEYVDPDLLDQDEKKENLAELAAWKWRTAFQVSSRTRELMDLYLAISSTRRDAPDFKPYLYGGEAGVLTRNVGGAKIFRQRVKTIDRGFPLLIPMRGKLPTYEEFLAGEVDVGSVEPLAKKK
Ga0315882_102459	Ga0315882_1024591	F050069	PLHKVIESHLMRQEWRLVGPPTEKKISSACVYPCQTSVDLVSATDNLSLEVTEAILGSLLRKSIIIPGPVRLRAFQSLRPLVDCAGEEKEVSHGQMMGSYLSFPLLSLHSYLAALWALRGEEGNVLVNGDDTLVSSHRYLEVSDYPSGYKLNDLKTIRSETVAEINSTAFLKGRGGKWREIRHLRRGGFLADYPGMLHAAKAVAWSVPWTDAFIRSRIGKKWGFLPTQLRLNPKSYVAHERHRSMWNRNFTCLPEAPKELSTSLLSVRRQLDPDERVALFLHIWATGREGGRKRDVFNPTVGFVRRTYQYRAVKPWSRLTYLSKLKALKVPAGRGEEELRFLPADYVSIREDLALKELANFGSLM
Ga0315882_102689	Ga0315882_1026891	F030953	TEEKMASVLVNAYQTSVDLVAATDGLDLTVSQAILDSLFFTSVKIPRTLRAFAKSSLYPSFLNSRGEVSRVSHGQMQGAYLSFPLLCIHSYCAASWAAREEPEARFLVNGDDTVISAGRAIGVQDYPPGYRLNASKTIRAENVAELNSTVFLRSGGRWREIRHLRRGGAVADYPGMMHMAEAVLTTPGFVDAFQRCRIGRRWGFLPSQLGHTTYPSYKRERGLRVRRFWTPLPEPSDDVVFPEELVRITGRDPTPVEAEALRVVMWRHGRWGGSKRDVFSPSCGKVRRSYRYRAQPCKSYLSFVGSRRPKLSSLCEKEGGMNLVPATFVSDEESRGLEDLEQFRVNWDRGFILL
Ga0315882_104070	Ga0315882_1040701	F038019	VKGSPTHLAAISITMSRSGTPLCTAAPVKPNIGSGAQTCRGCFRSTADTRETISNGLRLIRIRYRIPCSELPDLRSEELNKFLSYLLLQGKKRPIVKFPRKQSLRRDSDGLLPLMRLLKHERWELAHSIASIKRSLPAGCRQHTPSARPAWEQNAFSIPPSPSSEYLRFVRREVSRIFPLGWDRDYADFVWQHIPNPTARMTAKRADHHFRGRGKEFRGQCMIGRSIPIDQPVKARYKEVMSAGKCRPLVIYDESTEILAPLHKVIESHLMRQEWRLVGPPTEKKISSACVYPCQTSVDL
Ga0315882_104286	Ga0315882_1042861	F042666	YVICWSLPQMTLRKFAFQRSSSRVAHVTRSVDNPTSGSTVKRCFECSQSVRHTKETIHNGLQLLRVRYGLPYSELPDCGPGDLSRFLSFLLLQGKERTSVAFPRRQRRGETGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSARSQWEKTACSQPPPPSPDYIAHVRRVVAGIFRPGWDRSYHSFVGNHVPNPSARACKGRADALWAGRRDEFFIATTSESEVVPHSLSGRYKDILSAGKTRPMLIFDEHVELLAPLHKLLYSHLAKQDWLLCGPPTEERMASVLVND
Ga0315882_105015	Ga0315882_1050151	F043722	DATRPTRSIPKFFWKLSPYYYTWMLAIRLGLPLGAPEAYGGIGLPIAPKRSSTDHVRWLSFLSQRPKDELVIGLGLSPLGRSGQSLLDRAASGWVREVLASDVQWASEGLELLSPLALSDDAQLRLSLSEGYRRSVSRIRSVEFYFRAPPGTLEPHAPSVRMSVDRFRRKVSGAVILGSKMKYANTIRDLERKMQIFFTTSGGFLPDPWAKPSSVYGLERSTEVKVRWKAPWLLGVG
Ga0315882_105593	Ga0315882_1055931	F025888	KTRFPTCSLTAVNLVQQILRRVADHVMIRDPRFSEALGGDLRVDMRGEDGPWESQDCTAATDLHPEWLTRGFYEELAERYSCLLPYKRWFPKLFGPKKILSSKPDDLLPSALLEEYSRAPLLDDDLLSPSRMRRGRTGLGHADHILEMWSDWLTMLNGLPGTITSTGQMMGDPTSFPPLMLVSLCSAEQTLKVYPYTAKERRRRYRGLKPSEAKLKGVGDDAVLPRWHRARQQLYYSCLEELSAMLSWSKCFNHPTRGLIA
Ga0315882_105799	Ga0315882_1057991	F052301	AEYRGDSRIKDAFVVTVSGPGGTRSFTVHRPIGDTPLGDGEWVFTPVGEVTTLLSRMENPYEKRTEELRAKQRISWAVTKNLAKFDADGTTLLLPCGKKRAELLKDAHRAAKEAAKSKNTKPGAQDFLLHLSPQEKKEETALSDYLKSENVVRAAERAVPLPQYETCGGPLADHKQVGVKYLQNVGNSHQAVDKLIYHLAAGGDSAASAEATAGSPAAKRQASPPKESPTK
Ga0315882_105971	Ga0315882_1059711	F045460	EVAASVKKLLGNCPSDDPKEVMAWQSIKKGLPPSCECMTAPLMAKLVEGFARPKRDLPAGYLRFVQQQTLRLFPKGWDLGYEEQVLLTSPPLSSTIENSRANGGCLGSGIDHDAFLNEALSGPFRPERERPEAELILVQSAGKPRPLTKFSADELLLRPLHKTIYNHLSRSRWLARGDVTDEMLLKAGFTDSGHLTSGDYASATDNLSIEVAEVIVSALISTSSVVPPSVCQQATRILRPWLFYMVSESPGSPP
Ga0315882_106033	Ga0315882_1060331	F078027	MGLSVFGEGESGLKVLSQQFSLLNDSKESSVDFSLSLLSFSDLLLFFFGFFLGGSSSKESIFTLLGSLGLYSLEEVVVDLFDLSASNIDLGGGGDDSALVNSSKRNTVELEGTSDQKEARLELLKEDNSLTLESTDQKDQNLARGNVLSKSNRLGGLSGIFTYTLDVVSGVPLGDSGGGNLSSLNSAGSFLGVLGCHRN
Ga0315882_106736	Ga0315882_1067361	F025888	PILPIVAEEKGLKTRFPTCSLTAVNLVQQILRRVADHVMIRDPRFSEALGGDLRVDMRGEDGPWESQDCTAATDFHPEWLTRGFYEELAERYSCLHPYKRWFPKLFGPKKIHSSKPDDLLPSAVLEEYSRAPLLDDDLLRPSRLRRGRNGLGHADHILEMWSDWLSMLNGLPGTITSTGQMMGDPTSFPPLMLVSLCSAEQTLKVYPYTTKERRRRYRGLKPSEAKLKGVGDDAVLPRWHRA
Ga0315882_107223	Ga0315882_1072231	F014836	FSCLLVFVIHMKGLLFLFSAILLVGIVHAQCPAVDFVCPQERIYNGCHCFHEWNDENRVGNWTKPENWLQLYEPSWVSFVSISGDNTVTVDEERRVNELVVGSNRWDTTRLVIDEDLTITYDDVPVISTVRAYRLPNGQVRLVIQGKGFGFVSEDISVNVTETYENDDDQNIDDVEGNVYECESVTLGYRDAKIECNITPDRLMPYTLLVSVSANGYTTEYHLLNKYIQ
Ga0315882_107502	Ga0315882_1075021	F045460	LPDSCECMTGPLMEKLVEGVRRPRRQLPVGYLRFVAQQTSRLFSKGWDLGYEEQVLLTSPPLSATTDSTRSEGGALGTGIDHSCFLTEALCGPSRPDRPAPEAELIVVQSAGKPRPLTKFSSDELLLRPLHKTIYNHLSRCKWLSRGDVSNEKLAKAGFHQGKGILTSGDYASATDNLSIEVAEVILSTILASSTVLPASVTERAMQILRPILYWVDGPSGCPLSSKKYV
Ga0315882_107688	Ga0315882_1076881	F028052	RQLSKDIMDVDSFVRNASIVEKVVFLDFYGAEMNTSPMVCLDEDLYVVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDEPEEPVSKESPVTPPTGGFPGTDPRCGTERTARWIHDQVTTNGDRTVSRFLEENPSRKLTGTPDGKFLAICPTGPHRRSKSADETQRIGLDGSLVPLRQRDVWRDHRIRPPNSSDIPPR
Ga0315882_107939	Ga0315882_1079391	F010295	VGGEGSSEGSGLLVTKVGGVVLTLDTFSDLFSVSLVDNSQVLSDGLSDDLDLAELGGGGATSDLEGSEGVKFLLVFFETLDEFVVGDGSKLENSELLVGHLMRSCENY
Ga0315882_108028	Ga0315882_1080281	F028375	LTHSPNMDISAQCEQWLAAHPKINWRSTFNFLLTPEAAKAIEFNDYGIACFAKGLQYELNDKNYQEAFNCYENGAMQLDSLCLFRLHEIYAGDASFNVEYNERQSMCHLLYSALISQFETFDTKVSFWQKLESFWKKDSQRKDYLLDLLTNPPTDYLVATGPLFAKLFNFYNNKETFTEILPELKALCSDVLKNKFFSILNAIFDFLAYTYNSAFSKVDLEKYV
Ga0315882_108090	Ga0315882_1080901	F075502	WQLSTMSTPNEIKNRNIEAMARALLLAIPLLRGLDDHLDPEGTLRRLLQKITNGEPCPSGLLTSTTEALQSFSKTLKVSARVASGSSTRHAKRVSFEEEGSYRDLYETFVPEGVPLTTKAPSGLLLPNTDTVLVFSDTEISQFLRDFAVTALGSGLSPQQLTARK
Ga0315882_108118	Ga0315882_1081181	F015954	EINSTAFLKGRGGKWREIRHLRRGGFLTDYPGMLHAAKAVAWSPQWTDAFIRSRIGKKWGFLPSQLRLNPKSYACHERARSMWNRNFTCLPEPPKEVSTLLLAVRRRLDPDEQVALFLHQWATGREGGSKRDVYRPTVGCVRRTYQYKAVKPWRFLSYLGQLRALKVPAGRGEEELRYLPANYVSIREDVVLRELADYGSHVFSDD
Ga0315882_108585	Ga0315882_1085851	F104166	APRGRGQGGGNPAAPGASMLLNPERAPALISKWQKLLGKDLESIQVEYKADGVAVQLFGMPGTAFEKKDGDGETVSITIPEYRDIKAKESAPSFEDAIFAFRNKFEVRLNQEFPQGVDLGDGSEAALRSAVQALPFHQRRVMLMSNKQFRTAYPNGFAGGANPPA
Ga0315882_108860	Ga0315882_1088601	F030315	VIKYNKFIIIIKYENILLIINDIDALKYNYQIGLDTLLVYTIKYEY
Ga0315882_109398	Ga0315882_1093981	F028052	ASVVEKVVFLDFYGAEMNTSPMVCLDEDLYIVYHDTQAYVYTPRMFQEYMRRCKAAEVCALYPDSDNAEEPVLKESPVTPPTGGFPGTDPRGGTDRTARWIHDQVTTSGDRTVSRFLEENPSKDLTGTPDGKMAIRPTAGHRHSKSDGDTQRIGLDGSLIPLRQKDVRRYHRIRPPNSSEIPTR
Ga0315882_109779	Ga0315882_1097791	F018668	MAFFKSLLIASVAAVAFAAPQGGASDGNKKVEISGQEASDKCGNGQKLACCNAGEDLIGLNCLSVPILAIPVQQSCGSNVAACCQTGDAEGNLLNLEANCLSIPL
Ga0315882_109913	Ga0315882_1099131	F089598	KDPPVTWQLISFTMTRSGTRTRTRTAASVKPNTGSEAQTCRGCFRSACDTRETISNGLKLIRIRYRIPVCELPDLQAEDLNKYLSYLLLQGKERASVAFPRRQRRRRDSDGLFSLIRLLKHERWELAHSIASIKRNLPAGCRQHSPSARPAWEQNAFSIPPSSSFEYLRFVRREVSRIFPFGWDRNYDDFVWRHVPNPTARMT
Ga0315882_110363	Ga0315882_1103631	F015954	NSTAFLKGRGGKWREIRHLRRGGFLADYPGMLHAAKAVAWSVPWTDAFIRSRIGKKWGFLPTQLRLNPKSYVAHERHRSMWNRHFTCLPEAPKELSTSLLPVRRQLDPDERVALFLHIWATGREGGRKRDVFNPTVGFVRRTYQYRAVRPWSRLTYLSKLKALKVPAGRGEEELRFLPADYVSIREDLALKELANFGSLM
Ga0315882_110639	Ga0315882_1106391	F105213	WNFFNSFTNELEKSEVFSLLSREETSFEGYVERTDTFEDLFVSSTDYSEATDLLQHTVGRDLGIPWMTKCGIPRVLQGIVVETCYKPRQIYFKATGLLADLGDPTDAKDIRVVTLRRGVLMGDPLTKPVLHLVNVCDRLLQKRIIDPDFYSRLSNYNQLAETLSRVKVLLNA
Ga0315882_110797	Ga0315882_1107971	F006377	MSRTLGSTDTGLTMGSGLVGETEFTEVSADHIELDFDIGEFFTSVDTDHGSDHFRENDGVSEMSLDGSGLLTRLEVLLGLSELLDQSLIFMLETSVESSLDSGTEEFDKLVVLEGNEIFEGETSEGIFLSGTLFSNLSHAICDS
Ga0315882_110992	Ga0315882_1109921	F104406	LPGIVAGVFMVVALSEELEERKAALPARKGMSAVAGLARRAIEAADRVVENMIATDTREGREGRSGEARCGVAVEES
Ga0315882_111326	Ga0315882_1113261	F080696	VELSNEVRKVGSRGFLGDDFNNLFSDGLDLLMLSVTGLSSLGGLLTGESDDEDSEDISVLGLNFTVSINEGLPLSDELAELVSGHIHSVEVGEASLTLNVFNAELNLSPGILIVVQISEGGFDDSALQGVRGDLCAGGSGDTGLADNSVSERGGGLNVVPFLSKERVLDLLLGTLLLAELLVFTDSHRIYLFQ
Ga0315882_111335	Ga0315882_1113351	F021791	AGYRIKPHVPPFEQIPANSVKFQPCDYTAQAEYLKR
Ga0315882_111335	Ga0315882_1113352	F030315	MKYIEFIIIINYENILLLKNDIEVLKYKYRIGLDTLLVYTIKYEYIINLLKLTF
Ga0315882_111533	Ga0315882_1115331	F018668	QSINQSIQPPHSLPTNPFQPTQSNKMAFIKSLLIASVAAFAYAAPQGGASDGNTKVGIDSQSNGAACGNGQKLACCNSGEDLIGLNCLSVPILAVPIQQACGSNVAACCQTGDADGNLINLELNCLALPL
Ga0315882_111583	Ga0315882_1115831	F070702	PRTLRSFAKSSLRPSFEGLDGQEKRISHGQMMGAYLSFPLLCIHSYCAASWAARDEVGARFLVNGDDTVISAGRAISVQDYPPGYRLNADKTIRAENVAELNSTVFLKSGRRWREVRHLRRGGAVADFPGMIHMAKAVMVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRAWTPLPEPS
Ga0315882_112047	Ga0315882_1120471	F023769	MDLHKNAFQRSSSRVAHVTRSVDNSTSGSTVKRCFECSQSARLTKETIHNGMQLLRVRYGLPYAELPDCTSMELSRFLSFLLLQGKERTSVAFPRRQKKIKKNTTNCEEKIGLCSLQRLCRRDRWARAHGCSSIKRNWPKSCRRHTPSARKAWEANACSQPPPPSSGYLQHVRRV
Ga0315882_112158	Ga0315882_1121581	F028052	LDEDLYIVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDVAEEPALKESPVTPPTGGFPGTDPRDGTDRTARWIHDQVTTSGNRTVSRFLEEKPIKDLTCAPDGKKLAIRPTGDHRRSKSDGETQRIGLDSRLIPLRQRDVRRDFRIRPPNSSDIPPR
Ga0315882_112428	Ga0315882_1124281	F102187	ALTALGVTSLLHPHTQGIATRITKTKFRLFPLGLGGWNGRESWGWLRTSCTRTRFFLVGDDDFLHPFPSVTCPPFVCIYGVCEGNISLAFQRRLYTGSFSSFFVITVARQSRAALGVRDAWLRAFLSFPVVYSERKSFVPTFVSRVYDNNRDYGVEKGNGNTCRHACWCTSMARRSGICMYTTS
Ga0315882_112570	Ga0315882_1125701	F104142	RYFVLFNVKSFTTMQSANAVNNNTRGGKLPPALNPEQPALTQPWRDFVSRGFITSIEVKFTGNATIVAFEVGPLVKVPEGQARTGLPAGMAKHYIIESNLWSPKGIKQKVGSQNDGVQLPKKSLVSKDLKAAETSDEDLRKRASAVAEALTDTVARGRIGSLKFMRKGVDTFEKWWSGAPADM
Ga0315882_113263	Ga0315882_1132632	F008406	VDPDLLDDQEKKENLAELAAWKWRTGYEVFSSSRAAMRFHLAVSATRRDAPDFRTYLYGCESGVLSRSVGGAKVFMQRVRRIDRGFPLLIPMRGKLPTYEEFLAGEVDVGSVELLAKDKK
Ga0315882_113742	Ga0315882_1137421	F022330	LLLDRGEVHLHFVVHNQDKGSTSTSEDVGEGTLEEGITTFILIDLSEAVKSTVVQDFLSTRLHHQSSSDGIEGIGEETGEGSDDLSNEELEEDAGLGVGQDGSLSGIVTTEVASSVGN
Ga0315882_113849	Ga0315882_1138491	F037504	IDITNSSKQLKNPHLLKANMQFSQVFFVAAVIASATAAPTGDLEARTSGGIRCQKHEGKWKYGWEGAAPSEKYTCATGGLINILTCVNILNGNTVNVDLLDILGL
Ga0315882_114015	Ga0315882_1140151	F080697	LRLLLLTGLDLALFLTSDLLSLGSEFLSGLSVVNLLLDDLESSESVSGFILQQVVSVVVDQDETSGSSTTEMGVETERDDVLGVSLELLGNEVGDLFSGDISLSRVEDFKDHLLSRKETVEQELLGFKYYGAFRHSQKLF
Ga0315882_114114	Ga0315882_1141141	F045460	GYLRFVAQQTSRLFSKGWDLGYEEQVLLTSPPLSATTDSTRSEGGALGTGIDHSCFLTEALCGPSRPSRPAPEAELIVVQSAGKPRPLTKFSSDELLLRPLHKTIYNHLSRCKWLSRGDVSNEKLAKAGFHQGKGILTSGDYASATDNLSIEVAEVILGTILASSTVLPASV
Ga0315882_114795	Ga0315882_1147951	F009606	QQTKFSMDSTKQQKPIENGRGPNVVRTKAKPKVNPVTGANFEFVNEPRIGDSIVVVLAGPSGVQSFTFHHPIGVTDVDDEDWVCTPTADIPSLLARRDDPDEADRKAKRDRYRLQLAVAAGLLKKADGDDQLVYPDTEINRQDALAAARAAAKDAVKAEKGKTPPDLY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300030826: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T31 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences