x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy .
OK
Sample 3300030925
3300030925: Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) (pilot)
Overview
Basic Information
IMG/M Taxon OID 3300030925 Open in IMG/M GOLD Reference Gs0128851 | Gp0242463 | Ga0214498 Sample Name Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome) (pilot) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 15887216 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 4
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 1 All Organisms → Viruses → Riboviria 1 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum 1 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa Type Host-Associated Taxonomy Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Unclassified
Location Information
Location USA: Michigan Coordinates Lat. (o ) 42.39 Long. (o ) -85.37 Alt. (m) N/A Depth (m) N/A Location on Map
Zoom: - Reset +
Powered by OpenStreetMap ©
Associated Families
Family Category Number of Sequences 3D Structure?
F021791 Metagenome / Metatranscriptome 217 Y F055741 Metagenome / Metatranscriptome 138 N F056211 Metagenome / Metatranscriptome 137 Y F102612 Metagenome / Metatranscriptome 101 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0214498_103235 Not Available 725 Open in IMG/M Ga0214498_104928 All Organisms → Viruses → Riboviria 620 Open in IMG/M Ga0214498_105220 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum 606 Open in IMG/M Ga0214498_108261 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria 505 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0214498_103235 Ga0214498_1032351 F021791 ADYRIKPHVPPFEKIPANSVKFQPCDCTAQAEYFSR Ga0214498_104928 Ga0214498_1049281 F055741 PAVACRMSTSCVQIAPLLPEKKHTTASAMTQEQIAKANRVTLSLYGVQTVMDIEPHLVPFFGMMRTTCIGKSRNAKNYADHVSRCKIKANSLMTTSGVVIDAQQLSDIARFSYFIDFEDQYGSDKLMFDQTYVTTLVADPLYKRGSGAITTGTLSLLTDMLMAAADCKNVKMGLMKAARAGVQHANRANVLNTL Ga0214498_105220 Ga0214498_1052201 F056211 MNTSITKSTTATGTGVSSGKGDVWHPYVNDPSYGQRILEVLSWLIIIAAVPAFLGGVYSIFVMGFGLALGLLGMHAWTRRHAVIFAIAAIFFMIWLILVIIFNAVRNVSTVVPFYSGTFINGNRYGAGQYNGSRIFTYIDHGILFFLTLAAFFVALKIASERRSDPNTLVHQTTTSTATV Ga0214498_108261 Ga0214498_1082611 F102612 AYQQRLETLYQSLPDLLTTEQEDRTGIEALEQDVGNLDVKEQNLQDRANKYCQEFLYIGGPTPHKQDLTST
