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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300031020 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0068071 | Gp0115369 | Ga0074016 |
| Sample Name | Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 3 (Eukaryote Community Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 100851358 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 27 |
| Associated Families | 26 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1 | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Sarcoptiformes → Oribatida → Brachypylina → Oppioidea → Oppiidae → Medioppia → Medioppia subpectinata | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → forest floor → wood |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Dalarna County | |||||||
| Coordinates | Lat. (o) | 60.97 | Long. (o) | 15.87 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000194 | Metagenome / Metatranscriptome | 1661 | Y |
| F001542 | Metagenome / Metatranscriptome | 673 | Y |
| F001623 | Metagenome / Metatranscriptome | 661 | Y |
| F003108 | Metagenome / Metatranscriptome | 506 | Y |
| F003262 | Metagenome / Metatranscriptome | 496 | Y |
| F003657 | Metagenome / Metatranscriptome | 474 | Y |
| F006461 | Metagenome / Metatranscriptome | 372 | Y |
| F006782 | Metagenome / Metatranscriptome | 364 | Y |
| F008027 | Metagenome / Metatranscriptome | 340 | Y |
| F008175 | Metagenome / Metatranscriptome | 337 | Y |
| F012846 | Metagenome / Metatranscriptome | 276 | Y |
| F018506 | Metagenome / Metatranscriptome | 234 | Y |
| F020175 | Metagenome / Metatranscriptome | 225 | Y |
| F028371 | Metagenome / Metatranscriptome | 191 | Y |
| F044225 | Metagenome / Metatranscriptome | 154 | Y |
| F050067 | Metagenome / Metatranscriptome | 145 | Y |
| F052339 | Metagenome / Metatranscriptome | 142 | N |
| F066322 | Metagenome / Metatranscriptome | 126 | N |
| F076781 | Metagenome / Metatranscriptome | 117 | Y |
| F076782 | Metagenome / Metatranscriptome | 117 | Y |
| F078067 | Metagenome / Metatranscriptome | 116 | Y |
| F078135 | Metagenome / Metatranscriptome | 116 | Y |
| F079432 | Metagenome / Metatranscriptome | 115 | Y |
| F080696 | Metagenome / Metatranscriptome | 114 | Y |
| F089635 | Metagenome / Metatranscriptome | 108 | Y |
| F096705 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0074016_1097558 | All Organisms → cellular organisms → Eukaryota | 523 | Open in IMG/M |
| Ga0074016_1113265 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces litmocidini | 539 | Open in IMG/M |
| Ga0074016_1119219 | Not Available | 619 | Open in IMG/M |
| Ga0074016_1188893 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri | 687 | Open in IMG/M |
| Ga0074016_1194016 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 742 | Open in IMG/M |
| Ga0074016_1212912 | Not Available | 703 | Open in IMG/M |
| Ga0074016_1213427 | Not Available | 709 | Open in IMG/M |
| Ga0074016_1215197 | Not Available | 594 | Open in IMG/M |
| Ga0074016_1215805 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 706 | Open in IMG/M |
| Ga0074016_1215985 | Not Available | 554 | Open in IMG/M |
| Ga0074016_1217783 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida | 502 | Open in IMG/M |
| Ga0074016_1219583 | Not Available | 652 | Open in IMG/M |
| Ga0074016_1219764 | Not Available | 702 | Open in IMG/M |
| Ga0074016_1222599 | Not Available | 502 | Open in IMG/M |
| Ga0074016_1224294 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 503 | Open in IMG/M |
| Ga0074016_1229395 | All Organisms → cellular organisms → Eukaryota | 582 | Open in IMG/M |
| Ga0074016_1229599 | Not Available | 535 | Open in IMG/M |
| Ga0074016_1230994 | Not Available | 510 | Open in IMG/M |
| Ga0074016_1232896 | Not Available | 786 | Open in IMG/M |
| Ga0074016_1235394 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood1 | 504 | Open in IMG/M |
| Ga0074016_1239614 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | 518 | Open in IMG/M |
| Ga0074016_1242940 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Sarcoptiformes → Oribatida → Brachypylina → Oppioidea → Oppiidae → Medioppia → Medioppia subpectinata | 604 | Open in IMG/M |
| Ga0074016_1244872 | Not Available | 547 | Open in IMG/M |
| Ga0074016_1246534 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 669 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0074016_1097558 | Ga0074016_10975581 | F006461 | MRSAAILLVSLFLVGIHGWQLEVINKVSPCAGRNYCTLKLFTGGGGQQLLCEGQATTIQGGDIPATGLGIQENGEYCRCCGNEAGCSNPDNAGMQLVVNNGNCGSIQLNNPFYCGVHPPNAKSVVGVQMGGSWPNCQVTLYRLGNAPGCQSSC |
| Ga0074016_1113265 | Ga0074016_11132651 | F078067 | GEVLDKRRLVFVSASFLSKQYKSIDREVLNDSIFFFGAKRSWLFPANREEMLEARSQPTKYLEFDEDFKSLILQKEENDLVCWLKPEGDFKLVSAFFEKVVDPVSGENYLPLVLDDDWWRDEFDTKEAKYTSNVEQIISNYTAGEHDYDAVMELIYQSNPTLVPTLFWASEAEEKL |
| Ga0074016_1119219 | Ga0074016_11192191 | F003262 | LFLLCVTFACAQTKPVWPDAASLSVFHHNWHAPGGRSFSRIFYDRASGYERIDGPRLFFGEEYWTTVILDTKAQRETFIAYQRELVTCFTGPTNHTIPHPDFANARYIGKSLVDYVRVDQWVERLNNGQDGVVVFANEKNGEILRLDFHDHRRNRAVRFDIHEFDAGTQDPGLWVIPDAIAAVCNKVPTAFEWA |
| Ga0074016_1182727 | Ga0074016_11827271 | F000194 | ASRRQARTAASGGTELVGVSQETLQEFQGAFMYYCHPDGNAGDDIMEEKLTEAGLDKLIRGLGWGGALKAKDMLRETGKTELDFIAFRDMMVARMKASETEEAIRAQFEKFDPKQSRRIPKGEMLTALRKLGRRPLTEAQIEELLQIPGISDGEYFYYEKFLESFFGQKGKASTD |
| Ga0074016_1188893 | Ga0074016_11888931 | F003657 | PLNRRLATLAAIFAFLSVILGVIALATNYWTINTAVEQIRNETTVVESQPVGYLWNGLFQTCRTNLPCFARFWPTTFVICLLGLLFLLAGGIFSALDIPKASDRRFITPLLMFVGCVLLTAGLVDYAAYELLNYHSSRAMIAAVVFAYTALPISAFVAGRYSALERSVLINNEVHGTQKYSATNGNGL |
| Ga0074016_1194016 | Ga0074016_11940162 | F076782 | LYLRADIIYHDTIILSIPRPALLQITPGGEWNINLVVDLPTLLIGEIISMSQQERVGGDFEVFIQILERGSTHVVHTSRLRLGATFPQKFRIELDNELFVQYPGLQARAVIKNCKDQILFEAGGIVNIHAGLNVKVDLPVVLTNPQKYKELQVNVNDTASLHIGVWRLSVTGTVTGPEAGVVVASDSGSRTRLDDGSDSRDL |
| Ga0074016_1212912 | Ga0074016_12129121 | F028371 | LDLVVDPSFLDSTSNDSLNVSGLLDFSSSDFSELLLTEFNSVMSQIPLSERSGIDLDDGALDQGVGSDQFVVRGVVDDDKNLSLSGDLLRRPGVVSGVELEGLELVVTTSNSVSSDSLFTDLGEGSRTSRFVLLFLLVDGHTTTGKSSLVS |
| Ga0074016_1213427 | Ga0074016_12134271 | F096705 | AYLNVLLVAMVATLFVLHVQRAESLKRSREPTRGLDENLNIVTGNVNITCTMSQSAQYSSNQCGNGACVLWNSTGYSIRLLENYGPSICACADGYSHLFRPCDYQRKPQLNTWFASFFGGIVGADWFYLYAGVGGNGGYPVAGVFKLLTGGFFSIWCLVDWIRVLAHGFNDARGMALYENLTGNTKHEGTNSQNNHLGYYVYNANDNLNTQIRKEARGRIE |
| Ga0074016_1215197 | Ga0074016_12151971 | F044225 | DAAASKAQDLKDQAHGKAKDYVKDQRSYATQAADYIHDKVDEVVGGVKSKVGLAGEAVRHKKEELSEEARHAAAVAAEEAKHAATEAKYSDHTGTAKEKLHDAKRTIKQKAAEFADNHL |
| Ga0074016_1215805 | Ga0074016_12158051 | F001623 | SLDPLIRRMSMIAGIFAFLGVIIGVVALATNYWTMENMVSPGMAMQSPNGTMMMNEKSDWAWNGLFYWCTTQNNVGCQTRFWTTTFILCLLGLIFMLVGGIFSMWEMFQTSDRRFVIPMLFFVACVLMTAGLFDYGSWARLNSHSSRAMISAIVFGYAALPISAFIAGRYSAYERYMNNGHVNNGQKYVPASTNGN |
| Ga0074016_1215985 | Ga0074016_12159851 | F003108 | PNAFSATLEIHRGNNPRPDFWRQFYDSVKQVDRFDGLVDFRGDRFFSNIYLLHNIGRQYNVFYQFNEVLCFYHPINSTVPKPDFTNWSYGGKALVQYQVADHWFFRDQARGEFLQYYDNADNTNPLRFDFEIRRNGTNVDEQWFFHEFDGQTQDPNLFDLPVTVKSICNSAAESDWVNLSHF |
| Ga0074016_1217783 | Ga0074016_12177831 | F089635 | LVLHVCFYLEMNSRNYKHINLFLNRVLKILIDAHTNILSSVFATLVLGAEGSFLSGQQLVSVFIDLELSDDDLRGMDGDVNGLTIKLLLGELFNIDAPSKSVYLGDFTLVAL |
| Ga0074016_1219583 | Ga0074016_12195831 | F012846 | GGIEGHVKNTWSKGLDKDIPQEVVLVEQYNPHKDLINEFESRRNELDRVLGGRKLQTIQAFVTLHIQTLRKVLKQGFYRALGVQKLAFSTDPSIAIREGGGGNQNKILLCRITLGREGSDYQLLNNKYIIENLQGIMPAFLITYAAPNEAISLSPLSNEPEFQPVHGEEEIVFHEAVVRRYEDDGQGSVASAYQDDSKNVFGDEAHTLKSEEDRIL |
| Ga0074016_1219764 | Ga0074016_12197642 | F076781 | GLAGLLLCLLCLATLGLLGLFGAFIAVTAYLGGVYRALRNNRTGAASALSVNMVILLAAVCFAGFHKLRRSL |
| Ga0074016_1222599 | Ga0074016_12225991 | F079432 | SSRSAMTLRSLSKPAASFGSYLNSNESSVLEPEERPAYYNVYDDDEIFETPAPERSFDSGIEPESRQTTPSEEPSSGVFNSTFDDEVL |
| Ga0074016_1224294 | Ga0074016_12242941 | F078135 | VVRRQKFRKSPPQPVDRHLAEIGEFDGSIYINAGIDSTCSKKRGRILHKLTNGVMVSSSPIQAATKRTLSVTHDDLLSELSNDSSNDDRFDSINSRCCSHCGK |
| Ga0074016_1229395 | Ga0074016_12293951 | F080696 | DELASLGDHLGELISVVELGNEVAEIGAGGFLVDDFDNLFSDGLDLLVLSVAGLSSLSGLLTGESDDEDSEDIAVLGLNFTVSINEGLPLSNELAELISGHVHSVEVGEASLTLDVFNAELDLSPGIGVGVQISEGGFNDSALESVSGDLCSGGSSDAGLSDDSVSEGSRGLDIVPFLSEEGILDLFLGTLLL |
| Ga0074016_1229599 | Ga0074016_12295991 | F018506 | PTPPTWPSEFSASVLIAANDRRRPEFTRWFASYPQKKDRFDGLTEWKGEEYLAEIILDGNTQQQTNVFYDRESVVCFKHANNRTFPQPNFSNFDYRGLALIDYNVVLHWEERVRGDIFLEYFESQVGRNPVQFNVHDLRRQRVETWRFWEFDASPQNPTVFTLPQAIQAVCN |
| Ga0074016_1230994 | Ga0074016_12309941 | F008027 | PDQYTMPHGIKILVANYGGKDVTQIAKQQHKANSHFVASNNYFGDPLPNVPKFLHVIYSFHGVLGSVSIPEGQQFQPYPPKLVILGALYGSADVTEKVKGLVPYGADHGHFQVENSHFGDPNPGIFKNFSIAYVRNGELKQIAAKEHDSIHLN |
| Ga0074016_1232896 | Ga0074016_12328961 | F066322 | ANATNLGQIEGRLIVAEFQLAADLRRLGRPIDQNEYRDLLITRAEGLQAWAVVQIANARNRSVEVQRVQELEAQVATLVGLLRNATLRSDLEALEERLNTVEENLIVELRAIGQPLIPRDQIVALERRAEELAIRLLIEIRRLFAEGRTLLAEGLQAEERNLVSLDVDLRVALTAERIARVEARLTEAENRVAAELARIAGSFLFR |
| Ga0074016_1235394 | Ga0074016_12353942 | F008175 | GGLAACACCLIIIAIWGLFATTIALAVYTRQWRDAIKASGGLSTNSGMQMLFSHALLIGILCVYGYLGVRRALRSAN |
| Ga0074016_1238766 | Ga0074016_12387661 | F052339 | PLASMGILKKLFNNKKKSASESMSLTEESGYYEFEVKQWTKFGQTMRDKSSEIRMLIINPEGISVVNVYSKETILSIPFFDMKWFELHPAKNEWLVKTAGEDKGIVYFSSKDAAAIHKVAVKALKTLIRSRRLRLNEASTDNTDIRSVIAEMADDCEDKIDLDVLAPDSPQLRKLNFAAKSSPMGRAQA |
| Ga0074016_1239614 | Ga0074016_12396141 | F020175 | SSLFPNQFHNNNLTGQLVNVSMLVERPCPLLPPVVVSYLYGSPTGWNAVLVGLLSSILAIIFLLTCLYYLAFRRRYIKEVSDSPSPVALIDKNTRSSVPVTSSSQTATTTFMNEPGKEMKTNIFTEHKSSSTGNGDFVVGMPTLGNGHTNGLLANGITDPSELRLLQHEHH |
| Ga0074016_1242940 | Ga0074016_12429401 | F050067 | VIVRAQSSCHLRELDLCLASGLASGQNLPTTVAEINKQCNGFKEMNECMGNYSRRCTTKSMREFLRGITSQGDVRSWYSEFCTKESSVEREKYLKHAVCLNSANKESRGCIRDLTVALDKAINSDIENRIPEMCCAVKRMRKCSSDIIEGKCGKEGAKYMGQMMSSIAGTRLPEIACRDYDPTSQQCISILPAPGSKPAN |
| Ga0074016_1244872 | Ga0074016_12448721 | F006782 | LFALFALAIAYPTINDNFQSTNSVTRHFRNESRTFSETVYEDFTGKQRRIDTSVSSTTKIVVYQFATNRTEYVDVNGEHCNKRDFYEPWVPFFDWLKRSTNNGTCASNGRSGTLWAETQRGGIEFTLCANGNTPIAFDVIDRQQTTLDVVLFNTFVPGTPAASNFQLPSRCYTRF |
| Ga0074016_1245799 | Ga0074016_12457991 | F052339 | HYHSHTMGILKKLFNKKKGTESVSLTEECGYYEFEVQQWTKFGNLVKNKNSELRTLIINPEGISVINMHSREVILTIPFFDMKWFELHPAKSQWLVKIAGEDKGVIYFSSRQAAAIHKIAVKCLKTLIRTRRLRLQEHSQSPDLRSVMADMYDDCQDKIDLDVIAPDSPQLKKLNFQAMASPLRPMC |
| Ga0074016_1246534 | Ga0074016_12465341 | F001542 | AAFFAFVGVVLGVVALATNYWTVENVFTPGKAVAMQNGTMFMNENSDWTWNGLFYFCSSRVNIECVSRFWTTTFILCLIGLMFLLVGGIFLCWDMFKISDRRFIIPMLFFVACVLMTAGLFDYGSWARLNSHSSRTMIAAIVFAYSALPMAAFIAGRYSALDRFVTNGHVTNGQKYVPASTNGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |