Sample 3300031069

3300031069: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T19 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300031069 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0134331 \| Gp0333262 \| Ga0315846
Sample Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T19 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22795760
Sequencing Scaffolds	38
Novel Protein Genes	46
Associated Families	41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Eukaryota	7
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	4
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → Viruses → Riboviria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Plant Litter Microbial Communities From East Loma Ridge, Irvine, California
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004521	Metagenome / Metatranscriptome	434	Y
F006377	Metagenome / Metatranscriptome	374	Y
F008406	Metatranscriptome	333	N
F009305	Metagenome / Metatranscriptome	319	Y
F009606	Metagenome / Metatranscriptome	315	Y
F010295	Metagenome / Metatranscriptome	305	Y
F012845	Metagenome / Metatranscriptome	276	Y
F015954	Metagenome / Metatranscriptome	250	Y
F018299	Metagenome / Metatranscriptome	235	Y
F018668	Metagenome / Metatranscriptome	233	Y
F023044	Metagenome / Metatranscriptome	211	Y
F025888	Metagenome / Metatranscriptome	199	N
F026808	Metagenome / Metatranscriptome	196	Y
F028052	Metatranscriptome	192	N
F028371	Metagenome / Metatranscriptome	191	Y
F028375	Metagenome / Metatranscriptome	191	Y
F030309	Metagenome / Metatranscriptome	185	N
F030315	Metagenome / Metatranscriptome	185	Y
F030999	Metagenome / Metatranscriptome	183	Y
F033276	Metatranscriptome	177	N
F035602	Metagenome / Metatranscriptome	171	Y
F041531	Metatranscriptome	159	Y
F042666	Metatranscriptome	157	N
F044246	Metagenome / Metatranscriptome	154	N
F044843	Metagenome / Metatranscriptome	153	N
F050038	Metatranscriptome	145	Y
F057799	Metagenome / Metatranscriptome	135	N
F065812	Metagenome / Metatranscriptome	127	Y
F068418	Metagenome / Metatranscriptome	124	Y
F069521	Metatranscriptome	123	N
F070702	Metatranscriptome	122	N
F075502	Metatranscriptome	118	N
F078027	Metagenome / Metatranscriptome	116	Y
F089598	Metatranscriptome	108	N
F089635	Metagenome / Metatranscriptome	108	Y
F096377	Metagenome / Metatranscriptome	104	Y
F098370	Metagenome / Metatranscriptome	103	N
F102187	Metagenome / Metatranscriptome	101	N
F102267	Metatranscriptome	101	N
F104166	Metagenome / Metatranscriptome	100	Y
F104406	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0315846_100258	Not Available	2195	Open in IMG/M
Ga0315846_101045	Not Available	1497	Open in IMG/M
Ga0315846_101340	Not Available	1371	Open in IMG/M
Ga0315846_101638	All Organisms → cellular organisms → Eukaryota	1270	Open in IMG/M
Ga0315846_101660	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	1265	Open in IMG/M
Ga0315846_101768	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1235	Open in IMG/M
Ga0315846_101980	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1184	Open in IMG/M
Ga0315846_103057	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	994	Open in IMG/M
Ga0315846_103241	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	974	Open in IMG/M
Ga0315846_103287	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	969	Open in IMG/M
Ga0315846_104298	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	868	Open in IMG/M
Ga0315846_104569	Not Available	847	Open in IMG/M
Ga0315846_104896	Not Available	824	Open in IMG/M
Ga0315846_105293	Not Available	797	Open in IMG/M
Ga0315846_106239	Not Available	742	Open in IMG/M
Ga0315846_106907	Not Available	711	Open in IMG/M
Ga0315846_107380	Not Available	692	Open in IMG/M
Ga0315846_108042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	668	Open in IMG/M
Ga0315846_108970	All Organisms → Viruses → Riboviria	638	Open in IMG/M
Ga0315846_109454	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	623	Open in IMG/M
Ga0315846_109844	All Organisms → cellular organisms → Eukaryota → Opisthokonta	612	Open in IMG/M
Ga0315846_110641	Not Available	592	Open in IMG/M
Ga0315846_110858	Not Available	588	Open in IMG/M
Ga0315846_110866	All Organisms → cellular organisms → Eukaryota	587	Open in IMG/M
Ga0315846_111045	All Organisms → cellular organisms → Eukaryota	583	Open in IMG/M
Ga0315846_111055	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	583	Open in IMG/M
Ga0315846_112541	Not Available	554	Open in IMG/M
Ga0315846_112876	Not Available	548	Open in IMG/M
Ga0315846_113034	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	545	Open in IMG/M
Ga0315846_113218	All Organisms → cellular organisms → Eukaryota	541	Open in IMG/M
Ga0315846_113318	All Organisms → cellular organisms → Eukaryota	540	Open in IMG/M
Ga0315846_113664	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Hymenostomatida	534	Open in IMG/M
Ga0315846_114028	All Organisms → cellular organisms → Eukaryota → Opisthokonta	528	Open in IMG/M
Ga0315846_114338	All Organisms → cellular organisms → Eukaryota	523	Open in IMG/M
Ga0315846_115040	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	510	Open in IMG/M
Ga0315846_115457	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	503	Open in IMG/M
Ga0315846_115559	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	502	Open in IMG/M
Ga0315846_115561	All Organisms → cellular organisms → Eukaryota	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0315846_100258	Ga0315846_1002581	F050038	MTRLPSGFTFMSSGTRSSDTCTAASVKPNIGSEAQTCRKCFRTACDTRETISNGLRLIRIRYRLPMSELPDLGPRDLSKFLSFLLLQGRARASVAFPRSQKLRRDADGLFSLQRMWKHERWEFAHSVASIKRSLPAGCPFHTHSARPAWEQNAFSLPPPSSPEYLRFVRDEVSRIFPLGWDGKYADFVWRHTPNPTARMSAPRADLFFAGKGKDFRRQCLTGHSVPFEQPVRARYKEVMSAGKCRPLVIYDESVEILAPLHKVVENHLMGLPWRLVGPPTEGRVSSACVYPCQTSVDLVSATDNLSLDVTEAILGSLLCKSRQIPGPIRLRAFQSLRPLVDCAGEEREVSHGQMMGGYLSFPLLCLHSYLAARWALRGEEGTVLVNGDDTLVSANRYLEASDYPSGYKLNDLKTIRSERVAEINSTAFLVGRGGKWREIRHLRRGGFLSDYAGMLHASKAVAGSVKWTDAFIRSRIGKKWGFLPSQLGLNPRSFVAFSREQSMWNRFFTCLPCAPNERSTLLQGVRRRLDPDEQIAMYLFTWQYGREGGRKRDVYQPSVGSVRRTYAYRAVKPWSRTTYLSRLASLKVPARKGEEELRFLPADYVSKREDEVLSSLKLYGESMFENL
Ga0315846_100260	Ga0315846_1002601	F050038	LKDPLLTWLLTSITMSRSGTPLCTAAPVKPNIGSGAQTCRGCFRSTADTRETISNGLRLIRIRYRIPCSELPDLRSEELNKFLSYLLLQGKKRPIVKFPRKQSLRRDSDGLLPLMRLLKHERWELAHSIASIKRSLPAGCRQHTPSARPAWEQNAFSIPPSPSSEYLRFVRREVSRIFPLGWDRDYADFVWQHIPNPTARMTAKRADHHFRGRGKEFRGQCMIGRSIPIDQPVRARYKEVMSAGKCRPLVIYDESTEILAPLHKVIESHLMRQEWRLVGPPTEKKISSACVYPCQTSVDLVSATDNLSLEVTEAILGSLLRKSIIIPGPVRLRAFQSLRPLVDCAGEEKEVSHGQMMGSYLSFPLLSLHSYLAALWALRGEEGNVLVNGGDTLVSSHRYLEVSDYPSGYKLNDLKTIRSETVAEINSTAFLKGRGGKWREIRHLRRGGFLADYPGMLHAAKAVAWSVPWTDAFIRSRIGKKWGFLPTQLRLNPKSYVAHERHRSMWNRHFTCLPEAPKELSTSLLPVRRQLDPDERVALFLHIWATGREGGRKRDVFNPTVGFVRRTYQYRAVRPWSRLTYLSKLKALKVPAGRGEEELRFLPADYVSIREDLALKELANFGSLMFSGE
Ga0315846_101045	Ga0315846_1010452	F102267	MAAQQRQETRTGGNAAGGPSPKARPALDPRVPVLVQPFKGLVENGVITELSVKFSSMGTEVKGKASKRLVDVEKSGLNTTDFFPVGRLLEVAEMGEDPVLKRPGKKGNKGAGGPAQVKPARSLCKEDFTLAPAALQQRANEIARACGGGPLVGRVRSAGRFDGTGTVSYREWWDSASAELRALSLSEGKRFNTFTPEEMGVLTGLQCPFRGTLEFTVKEEDEEE
Ga0315846_101340	Ga0315846_1013401	F035602	FCHLTKPSSIMDPSVECKKWLETYPRFNWRSTFDFLLAPETLKAIEFNDYGISCFVRGLQYEFVDKNYQEAFNWYENGAMQYDSLCLFRLHEIYIGNTAFQVEYDERQALCHLIYSGLLSQFELFDYKVSFWQKFEAFWKKNTDKTTYIHELIMSPSADYFTATGPLFSKLFTFYSNKNTFLEALPELKALSTDTLKKKFFPILNAVFDFLAYTYNSGYSKTDLEAYVETILDMLTNDILFDNFFHNYLTHLKILRTRKKFALVFQRRLETDCFWIWSFSFLASMKNHYLGLLLGFSETFTDGSLVLKWKNTSSWVNNFMAFCYEKGIGAHKDTGKALELYEKDINTMPRVLFSRYRRVLVMKQNIAKGQQVDQEDVEAYVESEIKDLKIKLEERLEDNTRMDCYLYYVYGKLYEKIIEDTDGAIGWYQKGVDSDTDSCMKNHLLCNESWRMKCKK
Ga0315846_101638	Ga0315846_1016381	F065812	MGDKLLLRLNIDGKPIANKYCEVKMKITLKRGLKDLKSLRRKR
Ga0315846_101660	Ga0315846_1016601	F069521	FEISARQIDLSTLSRREYQILSKKSWFRRALTDGAAPTIKKGVRRSVEMVIGPPPKASLYGVFDTMAKDVAGDMVSRWTGVPVKPERVSIDYAAFRERSSQTPSYQPPSFRVLRRGPKLWSFVWPRPVYDHFMMYEDRAFVTNKARRSLWIDDHPCLQVSVDLVRTRFVRGSRNFRTYFGPPALLSPCSLPQVNCGYA
Ga0315846_101768	Ga0315846_1017681	F042666	MDLRKNAFQRSSSRVAHVTRSVDNSTSGSTVKRCFECSQSARLTKETIHNGMQLLRVRYGLPYAELPDCTPMELSRFLSFLLLQGKERTSVVFPRQQKKINKKTINCEEKIGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSARKAWEANACSQPPPPSSGYLQHVRRVVTDSFCPGWDKNYNSFVGNHVPNPSSRACKGRADALWAGRRSEFITATTSEMEVTPPALTGRYKDILSAGKTRPMLIFDESVELLAPLHKLLYSHLAKQDWLLCGPPTDKKMASVLVNACQTSVDLVAATDGLDLTVTEAILDALFFTSVKIPRTLRALAKSSLRPSFMGLGGKAKRISHGQMMGAYLSFPLLCIHSCCAASWAARDQVGARFLVNGDDTVISA
Ga0315846_101980	Ga0315846_1019801	F041531	TIRAENVAELNSTVFLKSGGKWREVRHLRRGGAVADYPGMIHMAEAVLVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYIRERGLRVRRTWTALPEPTDVVVFPEELDRITGRDPTPVEAEALRVVMWKHGRWGGSKRDVFSPSCGKVRRSYHYRAQPCRSHLSFVGSGRPKLSPLGKKGAGYALVPSSFMSEEEMRGLADLEQFRRNWDRGFILSED
Ga0315846_102028	Ga0315846_1020282	F102187	MLHVYTAIVMTLHHGNDAKRGACAAPTITMLYPYDLVIYPTFSFLSYSLTHRRLCHNAWTALGVTSLLHPHTQGIATRVTKTKFRLFPLGLGGWNGRESWGWLRTSCTRTRIFLVGDDDFLHPFPSVTCPPFVCIYGVCEGNISLAFQRRLYTGSFSSFFDITVARQSRAALGVRDAWLRAFLSFPVVYSERKSFVPTFVSRVYDNNRDYGVEKGNGNTCRHACWCTSMARRSGICMYTTSKS
Ga0315846_102997	Ga0315846_1029972	F008406	DILFRSGPHFSAHWMDTVGRLSLEVEKTKTSVSPEFGSLNSTLCRRYGAFYRVVATVRMGMLRESESFDTLSKGFDDFIAGIKGSLRYRAAMAWFSWNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRQGPSLQKIPSLKVENGLSLTCEYVDPDLLDQDEKKENLAELAAWKWRTAFQVSSRTRELMDLYLAVSATRRDAPDFKPYLYGGESGVLTRNVGGAKIFRQRVKTIDRGFPLLIPMRGKLPTYEEFLAGEVDVGSVEPLAKKK
Ga0315846_103057	Ga0315846_1030571	F015954	IRSGSVAEINSTAFLKNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPRSYPAHERERSMSNRFFTCLPGPPTEASTSLLAVRRELDPDEKIAMYLHQWRYGREGGRKRDVYNPTVGCVRRTYAYRAVKPWSRLSYLGKLRSLKLTARREEEELRYLPADYVSKREDEILGELRRFGSLVFKDL
Ga0315846_103241	Ga0315846_1032411	F104406	LPGIVAGVFMVVALSEELEERKAALPARKGMSAVAGLARRAIEAADRVVENMIATDTREGREGRSG
Ga0315846_103287	Ga0315846_1032871	F015954	AILGTLLRKSRNIPGPVRLRAHQSLRPIIDCGGEEREVSHGQMMGSYLSFPLLCLHSYLAARWALAGREGTILVNGDDTLVSANVYLEASSYPRGYKLNDMKTIRSGSVAEINSTAFLKNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPRSYPAHERERSMSNRIFTCLPGPPTEASTSLLAVRRELDPDEKIAMFLHLWDHGREGGRKRDVFNPTVGCVRRTYAYRSVKVWSRLSYLGKLRSLKVTARREEEELRYLPADYVSKREDEILAELRRFGSSVFENL
Ga0315846_104298	Ga0315846_1042981	F004521	MLQRTGGFSGSRAQYVPNVGAQRGVYRATYVRPTGYGYRRPLPPPVVPAGRGPGGAGLLAAILGPIGGLTGCLCCLNTIGVWGLFITAIPLTVFISRWVRDYENRTGQNGAGELVAPQLLLLVLLVCSLLFTFMRRS
Ga0315846_104569	Ga0315846_1045691	F028375	LAVECKEWLASFPKMNWRSTFSFLLAPETLKAVEFSDYGVACFAKGLQHEFNDKDYVEAFNYYENGAMQLDSLCLFRLHEIYMGDTNFKIEYNERQSVSHLLYSAMISQFETFDPKVSFMGKLEAFWKKDPVRRDYLLEVLSNPPADYFTPVSSLFAKLFTFYNNKDTIIEILPELKALQVDVIKGKFFSIINALFDFLAYTYNSGFSKVDLEKCVETILDMLTNDLLFDNFFQNYVTHLRLLRARKKFAFVFQRRIETDCFWIWSFSFLTSMKNHYLGVLA
Ga0315846_104896	Ga0315846_1048961	F009606	DNTDKKSQGPNVVRTKAKPKVNPVTGANFEFANEPRIGDSFVIVIAGPGGVMSFTYHHPIGVTDVDNDDWVCTPTGDIPNLLARKDDPDEADRKAQRDKYRLDLAVAANLLEEGDDGRLIYPDTEIIRPDALAAARVAAKSAVKDKEKPTPDLYIRFLPSEVQEAELLVRKFLADKGTIRKAEMQFPSSGYRTRSGPLADRDQVSATHLEGLGRAQAIDAVVKRIYSQGD
Ga0315846_105293	Ga0315846_1052931	F026808	ATLFTLHLHLHYITLTSTLLALTMPRQQGKRKSGGPRRSSGGARAPAFVFEPGEQRLRLDDLFASVTLEEGEVEGSVSLGGLTFPPSSARVLGWTITVSAVSGDVQFRTGVGHAKTARVVVPCAFPRPAAVSAPDVLLVGPENTTFGVFGSITVYYKSQ
Ga0315846_105849	Ga0315846_1058491	F089598	LKDPPVTWLLSSITMTRSGTRLRTTCTAASVKPNIGSEAQTCRGCFRSACDTRETISNGLRLIRIRFRIPGSELPDLEPKELSKYLSYLLLQGRKRAAVVFPRKQSLHRDSDGLLPLMRMLKHERWEFAHSVSSIKRSLPQGCRQHTPSARPAWEQNAFSTPPPPSSDYLRFVRSEVSKLFPYDWDRDYDDFVWRHVPNASARMNSPRADLHWCGNGKEFRRQCLTGRSVPIDQPVRARYKEVMSAGKCRPLV
Ga0315846_106239	Ga0315846_1062391	F028371	LVKLFFDLVINVSFLDSSGNSGLNVSGLLDFSLFLFGELSLTEFDSVVSQVPLSERSGINLDDGALNQGIGSDQFVVGGVVDDDKDLGLSGDLFRRPGEVTGVELEGLEFVVTTSDTESSDSLFTDLGKGSGTTGFVLLLLLVDGHTTTGKSSLVSGVS
Ga0315846_106907	Ga0315846_1069071	F012845	FEETFMNGSVILKWKNTESWINNFVGFCYEKGIGAGKSTDKGLEYYEKDLVQMPRVLFSRYRKLVCIKEKIARGEQVDQEYQSGAKIDLESQDLKQKLEERLEDSNRMDCYLFYVYGKIYEKIDDDVDRALEWYQKGLDASTDSCLKNHLLCNESWRMRCKKRVLKLRARKGLQVSIVNKNRED
Ga0315846_107380	Ga0315846_1073801	F028052	LSLYRQLSKDIMDVDSFVRNASIVEKVVFLDFYGAEMNTSPMVCLDEDLYVVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDEPEEPVSKESPVTPPTGGFPGTDPRCGTERTARWIHDQVATSGDRTVSRFLEENPSRKLTGTPDGKFLAICPTGPHRRSKSADETQRIGLDGSLVPLRQRDVWRDHRIRPPNSSDIPPR
Ga0315846_108042	Ga0315846_1080421	F009305	LEPEMSWXDEALSNELGTFIEAIFVLNIICXWLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAXLIVCPHHKTGIFGLVYLFFALFHQPTLHGLNEHNLYYKRRLLFTIGRIKQKKFYKQSYLNVELNLFFQTTYTMFIMCALYTNTFLPYGRFYNRLGGNIGMLSAYFYVFLYLAITSLRRPYWLELYFYFIFNKLNFLKNIKSKNNLTIKS
Ga0315846_108108	Ga0315846_1081081	F075502	MSTPNEIKNRNIEAMAQALLVAIPLLRGLDEHLDPEGTLRNLLRRIANGEPCPSGLLTNTTEALQSFTKTLKVSARVASGSSTGTAKRVSFEEEGSYKVPLYETFVPGGVSLESKAPPRQLLSKSDTEEEFSDAEITQFLRDFAVSVLGSGLNPQHFTVGK
Ga0315846_108970	Ga0315846_1089701	F025888	YVMENITYVPVLPIVAEEKGLKTRFPTCSLTAVNLVQQILRRVADHVMIRDPRFSEALGGDLRVDMRGEQGPWDSQDATAATDYHPEWLTRGFYEELANRYSSLAPYRRWFSKLFGPKKILTCDPTLCEPVSLLTHYPKAPLLDDKHAEMFHGVKVKKMGPGLTGLGHAEDILLYWNDWLDDLNGLPGTITTTGQMMGDPTSFPPLMLVTLC
Ga0315846_109454	Ga0315846_1094541	F015954	DYPGMLHAAKAVAWSPQWTDAFIRSRIGKKWGFLPSQLRLNPKSYACHERARSMWNRNFTCLPEPPKEVSTLLLAVRRRLDPDEQVALFLHQWATGREGGSKRDVYRPTVGCVRRTYQYKAVKPWRFLSYLGQLRALKVPAGRGEEELRYLPANYVSIREDVVLRELADYGSKVFSND
Ga0315846_109844	Ga0315846_1098441	F018668	ITSNNQSNPTTPHSLLSTPPPNNTNSIKMAFFKSLIIASVAAVAFAAPQGASDKNTEVKVSGQDNSPKCGNGQKIACCNSGEDLIGLNCLSVPILAIPIQKACGSNVAACCQTGDSEGNLINLEANCLAIPL
Ga0315846_110641	Ga0315846_1106411	F030315	VIKYNEFIIIIKYENILLIINDVDTLKYKYRIGLDTLLVYTIKYEYXIFI
Ga0315846_110858	Ga0315846_1108581	F030309	NPLHVKGEAKSKALSDAERKVLRSFFKLKEDRIPSDEWAAMDNKTRSVAMAERSIPRWASEAVLRKSSNLQLIIEGKITKETAQQAPRDPKKISALKANGQALEAWQQLKADFKGTPLLKKPASAKEKAFKKRFDQLVVSYGQQPCFPKLRERPDLQGRSPSRGRKPSSAGGDFLQMAKAFGEIARAFSGKSG
Ga0315846_110866	Ga0315846_1108661	F078027	LSVFRKSESGLKVLSQQFSLLNNSEEGSVDFSLDLLSVGDVLLFFFGFFLGGASGEESVFTLLGSLGLYSVEEGVFDLISFNATDVNLGGSGDDSGLVNSSKRNTVELIRTSDQEESRLKLLEEDNSLALESTDQKDQNLARSDVLSKSNRLGGLSGIFTYTLDVISGVPLGDSGGGNLSSLNSAGSFLGVL
Ga0315846_111045	Ga0315846_1110451	F096377	LVQFQSKYKNSSVYFIPTDDNEVNMFITDNDAIINEILNKEEIIEDSVSKLFSKLEKNPTSFKEDLWVPLFSLKENNVDLEDAKNLLKGEYKLNYATNTCEIGLNGARVLGNLKVRPSEKSKIIEKP
Ga0315846_111055	Ga0315846_1110551	F057799	AGSYESCVLGTDPSLSACLENRRSAGGLHGYVSNPQVENQLGRFRHDDFLTTCLDGATRPLSVASGLTVVQSAGKPRPLSKFSADAIHLRPLHKAIYDRLSRESWLCRGDFTTDVLQRAGFSYVEGETLTSGDYKSATDNLSIEVAEAILDELLRSTVSVPGSMKAYAMSILRPHLFNLEHGIDDFVPSRGQMM
Ga0315846_112428	Ga0315846_1124281	F098370	VRRQLDPDEQIAMFLHQWAFGREGGRKRDVYRPSVGCVRRTYAYRAVKPWSRFTFLSKLASLKLTARREEENLHFLPADYVSKREDEVLKELKLYGSKCFEDL
Ga0315846_112541	Ga0315846_1125411	F018299	VDTESGEGTVVGDDLDIGTILSELAFFLESEVFSLVKLGETVFTGDDDLLSTGELELASSEGFNGMGNVLFGKSDGVQDLVDLDSGNSTDGLTVGTSHTGLESIGTSAGEHFVNSDNVPRVDSASQVETFLTTLLDKVLVGSDTGSFHGFGGDLFLFKGDEMDSVGEFFNFSSLLTSIIN
Ga0315846_112876	Ga0315846_1128761	F030315	VIKYSKFIIIINYEGILLIKSDIETLKYNYRIGLDTLVVYTIKYEYINN
Ga0315846_113034	Ga0315846_1130341	F044246	VAFPRRQRRGETGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSARSQWEKTACSQPPPPSPDYVAHVRRVVAGIFRPGWDRNYHSFVGNHVPNPSARACKGRADALWAGRRDEFFIATTSESEVVPHSLSGRYKDILSAGKTRPMLIFDEHVELLAPLHKLLYSHLAKQDWLLC
Ga0315846_113218	Ga0315846_1132181	F068418	MDSGVWHQVGLELSDIDVQSTIESEGGSQRRDDLSNESVQVGVSGSLDIELSSADIIDGFIIEHNSDISMFEERVSGQD
Ga0315846_113318	Ga0315846_1133181	F006377	MNEETRLLEGSVGRTLGSTDTWLTMGSGLVGKTEFSHIFSDHVELDFDIGVFLTGMDTNNGSDHFGKDNSVSEVSLDGGGLLTRLEVLLGLSELLDESLIFMLETSAESSLDSGSEEFDELVVLEGDEIFEGETSEGVFLSGTFLSNVSHDL
Ga0315846_113475	Ga0315846_1134751	F070702	GKVSRVSHGQMMGAYLSFPLLCIHSYCAASWAARDQMDARFLVNGDDTVISAGREISVQDYPQGYRLNADKTIRARNTAELNSTVFLKSRGRWREIRHLRRGGAVADFPGMIHMAEAVMVAPGFVDAFQRCRIGRRWGFLPSQLGHTTYPSYKRERGLRVRRFWTPLPEPSFDVEFPE
Ga0315846_113664	Ga0315846_1136641	F089635	MRNYKHTIILSNRVLKNLIESHTNILASVFATLVLGAEGSFLSGQQFVSVFIDLELSDDDLRGMDGDVNGLSIELLLGELFNVDAPSKSVYLGDLTLVTL
Ga0315846_114028	Ga0315846_1140281	F030999	MNWSLIILGLVALSGLAIAENTYLIIAPKLLKVGFENQLSVFIAAASQPVEVKFQLTIGQQRIEGSTTVKAGETRNATLALPKEFPIGAGELTITGTGGARFEEKRDVIVYDNRYVVLVQTSTSSYRPGDEMEIRVIATDEQLLPLESSPLQIEIYDANLKLVGDFTNMTI
Ga0315846_114338	Ga0315846_1143381	F023044	GLIGGRASIDIAAIFNGFLQQITTPLAGIGQHLVNQGLAAVLGGLGTSRGISDILAALQGQISGAVSAASGALSGALGNLSSLGSSIIDASKPHWEQLQEQLVGHGLNVLGSISETINNAHGSITGGK
Ga0315846_115040	Ga0315846_1150401	F033276	TLAKQSDKHLREIPYSLVAVCRKDKKIRAALTSLPDRVLPTKQGVISMDLRPENYSLSRDEEHNAMLEEIERVRERGVARGSERRIKHKPGVVPAARSFNAVRKQLNKAAPDVIPACYVRCFINKVKEEGILREVAPLEMSLPPGDGSQINRLIDNIRAFKLTRNSSAFP
Ga0315846_115369	Ga0315846_1153691	F044843	VSHGQMMGSYLSFPLLCLHSYLAAVWALRGEEGNVLVNGDDTTVSSNRYLEVSDYPSGYKLNDLKTIRSETVVEINSTAFLKGRGGKWREVRHLRRGGFLTDYPGMLHAAKAVAWSPQWTDAFIRSRIGKKWGFLPSQLRLNPKSYACHERARSMWNRNFTCLPEPPK
Ga0315846_115457	Ga0315846_1154571	F104166	MLLNPERAPALISKWQKLLGKDLESIQVEYKADGVAVQLFGMPGTAFEKKDGDGETVSITIPEYRDIKAKESAPSFEDAKFAFRNKFEVRLNQEFPQGVDL
Ga0315846_115559	Ga0315846_1155591	F069521	SWFRRALTDGAAPTVKKGVRRSVEMVIGPPPKASLYGVFDTMAKDVAGDMVSRWTGVPVKPERVSIDYASFRERSSQAPSYQPPSLRVLQRGPKLWSFVWPKPVYDHFMMYEDRAFVTNKVRRSLWIDDHPCLQVSVDLVRTRFVRGSRNFRTYFGPPASLSPCSLP
Ga0315846_115561	Ga0315846_1155611	F010295	YNFQKAFLLPTFPAFYIPKRVQAWHNCRIKVLLGKTLSSEGVLSETEVVGLLGGSEGSDSSFVVGELSSDGSGLLVTKVGGVVFALNSFSDLFSVSLVDDSQVFSDGLSDNSDFAELSGGTTSNLEGSKVVEFLLVFFQTLEQFVIGSVSKLEDSELLVSHFSPLLI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031069: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T19 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences