Sample 3300031101

3300031101: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T18 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300031101 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0134331 \| Gp0333257 \| Ga0315841
Sample Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T18 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	38540254
Sequencing Scaffolds	41
Novel Protein Genes	49
Associated Families	35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	11
Not Available	16
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	4
All Organisms → cellular organisms → Eukaryota	2
All Organisms → Viruses → Riboviria	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Plant Litter Microbial Communities From East Loma Ridge, Irvine, California
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006377	Metagenome / Metatranscriptome	374	Y
F008406	Metatranscriptome	333	N
F009606	Metagenome / Metatranscriptome	315	Y
F014470	Metatranscriptome	262	Y
F015954	Metagenome / Metatranscriptome	250	Y
F018299	Metagenome / Metatranscriptome	235	Y
F018668	Metagenome / Metatranscriptome	233	Y
F022330	Metagenome / Metatranscriptome	214	Y
F025888	Metagenome / Metatranscriptome	199	N
F026808	Metagenome / Metatranscriptome	196	Y
F028052	Metatranscriptome	192	N
F030309	Metagenome / Metatranscriptome	185	N
F032498	Metagenome / Metatranscriptome	179	Y
F033655	Metagenome / Metatranscriptome	176	Y
F037504	Metagenome / Metatranscriptome	167	N
F041531	Metatranscriptome	159	Y
F043722	Metagenome / Metatranscriptome	155	N
F044246	Metagenome / Metatranscriptome	154	N
F044843	Metagenome / Metatranscriptome	153	N
F045460	Metatranscriptome	152	N
F049347	Metagenome / Metatranscriptome	146	Y
F049431	Metagenome / Metatranscriptome	146	N
F050038	Metatranscriptome	145	Y
F063215	Metatranscriptome	129	N
F065812	Metagenome / Metatranscriptome	127	Y
F066301	Metagenome / Metatranscriptome	126	N
F068314	Metagenome / Metatranscriptome	124	N
F075487	Metatranscriptome	118	N
F078016	Metatranscriptome	116	N
F094696	Metagenome / Metatranscriptome	105	N
F098370	Metagenome / Metatranscriptome	103	N
F100085	Metatranscriptome	102	N
F102187	Metagenome / Metatranscriptome	101	N
F102267	Metatranscriptome	101	N
F104141	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0315841_100494	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	2342	Open in IMG/M
Ga0315841_100547	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	2288	Open in IMG/M
Ga0315841_100558	Not Available	2274	Open in IMG/M
Ga0315841_100721	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	2129	Open in IMG/M
Ga0315841_101807	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1676	Open in IMG/M
Ga0315841_102421	Not Available	1521	Open in IMG/M
Ga0315841_103398	Not Available	1336	Open in IMG/M
Ga0315841_106813	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	1003	Open in IMG/M
Ga0315841_107649	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	955	Open in IMG/M
Ga0315841_108134	Not Available	927	Open in IMG/M
Ga0315841_108237	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	921	Open in IMG/M
Ga0315841_109111	Not Available	880	Open in IMG/M
Ga0315841_109559	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	860	Open in IMG/M
Ga0315841_110697	Not Available	817	Open in IMG/M
Ga0315841_111376	Not Available	793	Open in IMG/M
Ga0315841_114587	Not Available	705	Open in IMG/M
Ga0315841_115616	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima	681	Open in IMG/M
Ga0315841_115708	Not Available	679	Open in IMG/M
Ga0315841_116321	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	667	Open in IMG/M
Ga0315841_117426	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	646	Open in IMG/M
Ga0315841_117711	All Organisms → cellular organisms → Eukaryota	641	Open in IMG/M
Ga0315841_118045	Not Available	636	Open in IMG/M
Ga0315841_118693	All Organisms → Viruses → Riboviria	625	Open in IMG/M
Ga0315841_118812	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	623	Open in IMG/M
Ga0315841_119018	Not Available	620	Open in IMG/M
Ga0315841_119383	Not Available	615	Open in IMG/M
Ga0315841_119420	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	614	Open in IMG/M
Ga0315841_119657	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	610	Open in IMG/M
Ga0315841_119959	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	606	Open in IMG/M
Ga0315841_119996	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	605	Open in IMG/M
Ga0315841_120524	All Organisms → cellular organisms → Eukaryota → Opisthokonta	598	Open in IMG/M
Ga0315841_121098	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	590	Open in IMG/M
Ga0315841_121362	All Organisms → cellular organisms → Eukaryota	586	Open in IMG/M
Ga0315841_121919	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	578	Open in IMG/M
Ga0315841_122849	Not Available	566	Open in IMG/M
Ga0315841_123039	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	564	Open in IMG/M
Ga0315841_124365	Not Available	546	Open in IMG/M
Ga0315841_124417	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	546	Open in IMG/M
Ga0315841_125734	Not Available	529	Open in IMG/M
Ga0315841_126327	Not Available	523	Open in IMG/M
Ga0315841_127051	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	515	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0315841_100494	Ga0315841_1004941	F049347	LCTRQQIGMKFKNYSALTSGYAYSRIEECKLYYDRRLERNVVPRDLELYVRGNHNLYLKQIPSCLTLRKAGGPLSKSVEPFLMEDGFLFPSVDNHGEERNTPIEHWFSESSDASQAEELEDEVPGVSETNSRDIYEDPFRVLAGYCFASQYCEEKPVINVWAGGCHRLQGKIKPDLVGSDRKNVTWFTQINNHDEKMHLLFRHTHWGHRIQCARNSAKGEDPLRNFASTLFRRISFFLRGRHDPLWNNDEIEKFADYKVLRNKTYRAQRLLEVLKTVDGMFLQRFLSFPEEVWDWEKFDLFTLQGISVLLTDEFIDGEVTDFSLKEQVTHYEDLKRSRKLFKQVIHLDEPSKGLLAMNDAPRWVSSFLRPAWSWAVRFEGFSRLYLAGTLSQTRGSGTPPPLVVLRSKRKFLLSVSEPPPEFTATQAALVSAALDDVIGGIPDHVFTGLDTKARVTVTGSACWEATRKEGGTAQAILDLMSKYDEMPIPVRDMDTGKVLEYRHKDDFQSVGTAIFFACLDEVLWTEPEELRKVMLTIVREPSKARVVTKGLAALKIVLDTISKICAWPLKKGFKSSESGMGKSHHGWNLFKDFTSEEMYDLLFSEDRSRREEDTFNDHIDRVIRWQNLWFCSTDYQEATDRLIHAFARLVSRKWMKKCGIPQILQGIVMGICFQPRTVYFTATGPLKDIGHPSEGDTRKVTLYRGVLMGDPLTKVVLHFSNIISRSLGEGLATGEIFAHFQNGFEANEVFNAKALHT
Ga0315841_100547	Ga0315841_1005472	F066301	LLLLRVRYGIPYCELPDSEPCDLSRFLSFLLLQGKERASVVFPRCQRRGEDGLCKLQRLCRRDRWALSHSISSIKRNLPSGCRRHTPSVRSSWEENVLSQPPPSSPEYLAHVRRVATQVFRPGWDRRYNDFVGRHVPNSTSRFPKKSRADHLWAGRRSEFFNACTREHDVGTMFFARYKEVQSAGKKRPLLIYDESIDLLGPIHCMIYDHLRKTDWLLCGPPTEERMRSVLVNEYQTSVDLVAATDGLRHDVALTLLDSLFFTSVKIPRTLRSLAKGSLSPIFEGEDGELKRVRQGQMMGAYLSFPLLCLQSYCAATWAARDCEGARFIVNGDDCVISAGRYITMQDYPQGYRLNDDKTIRAKNVAEVNSTCFLRMGSKWREVRHVRRVGSTSDFSGMMHMAKAVLSSQKMVDAFQRCRIGRRWGFLPSQLGHYGYPAHLREQGLRVRRTFTPLPEPVVDCSFPEELVVITGRDPTAVEAERLKSIFWVHGRMGGLKRDVFDPSCGQVRRTYGYRKVARCSSLSYVGSMRKLNYQLRRKPGWFVVPATYRSEEEEKGLEELERLRSNWDQGFLDSGSLVF
Ga0315841_100558	Ga0315841_1005581	F050038	VKGSRHLRALLELTLMTSGTLSTAKCTAAPIKPNTGLGAQTCRSCLRAKLDTRETISNGLRLIRIKYGIPYVELPDLRPEDLSRFLSFLLLQGRKRPSVKFPRRQRPSIDGLSTLQRLRKHERWELAHSVSSIKRNLPAGCLRCATSERSLWEENAFSIPPPSSSAYLRFVRKEVSKIFPFGWDRNYDDFVWRHCPNPTARMNAPRADLFFAGKGRSFRRQCLTGKSIPIDEPVRARYKAVMSAGKSRPLVIYDESVEILAPLHKVMECHLMKLPWRLVGPPTEKRISSVCAYPCQTSVDLVSATDNLSLEVTEAILGTLLRKSQKIPGPVCLRAFQSLRPIIDCGGEEKEVSHGQMMGSYLSFPLLSLHSYLAAKWALGEREGNVLVNGDDTLVSANVYLEASSYPSGYKLNNLKTIRSENVAEINSTAFLRGSKGKWREIRHLRRGGFLSDYPGMMHGASAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPKSFPAHAREVSMSNRLFTCLPVPPTEASTLLSAVRRQLDPDETIAMFLHQWEHGREGGKKRDVFQPTVGGVRRTYAYRSVKIWRQLSYLGKLRALKVPARRREEELRYLPADYVSKREDEILSELRTFGLQCFEDL
Ga0315841_100721	Ga0315841_1007211	F050038	MTSGTPRRCTAASVKPNTGSEAKTCRSCLRANYDTRETISNGLRLIRIKYGLPYVELPDLRPGELSRFLSFLLLQGRQRPSVKFPRRQRPSSDGLSTLQRLRKHERWELAHSVSSIKRNLPAGCLLCANTERSSWEANAFSLPPSPPSDYLRFVRKEVSKIFPYGWDRNYDDFVWRHVPNASARMNQPRADLYFAGKGKSFRRQCLTGKSIPIDEPVRARYKAVMSAGKSRPLVIYDESVEILAPLHKVIDSHLMKLPWRLVGPPTEKVISSACVYPCQTSVDLVSATDNLSLEVTEAILGTLLRKSRIPGPVCLRAFQSLHPLIDCDGEEKEVLHGQMMGSYLSFPLLSLHSYLAALWALGGREGTILVNGDDTLVSSTVFLEASSYPSGYKLNDLKTIRSETIAEINSTAFLRNSKGKWREIRHLRRGGFLTNYSGMLHGAAAVRGSVEWTNAFIRSRIGKKWGFLPSQLGLHPKSYPAFSRERSMLNRTFTCLPGPPKADSTLLLAVRRQLDPDETIAMFLHQWEHGREGGKKRDVFEPSVGSIRRTYAYRAAKPWSRFTFLSKLASLKVTARREEENLHFLPADYVSKREDEVLKELKLYGSKCFEDL
Ga0315841_101807	Ga0315841_1018071	F066301	RGENGLCSLQRLCRRDRWGLAHSVSSIKRNLPAGCHLHTPSVRSQWEENVLSQPSPSSPEYLAHVRRVAARVFPAGWDRNYNDFVGRHVPNPTAREPKRSRADHLWAGRRDDFFNCATKESELSSTFFARYKEVQSAGKKRPLLIFDERVDLLAPMHSLMYHTLGKQDWLLCGPPTEERMTSVLVNDYQTSVDLVAATDGLRHDVAKALLDTLFFTSVKIPRSLRLLAEGSLSPVFQAEDGALKRVRQGQMMGSYLSFPLLCLQSYCAASWAARFDSGARYIVNGDDCVISASRYVTVQDYPSGYRLNDDKTIRAMNVAEVNSTAYLRQGGKWREVRHLRRGGAPTDYCGMMHMAKAVTSAQCWVDAYSRCRIGRRWGFLPSQLGHQGYPAHLRESGLRVRRTYTPLPEPVVDRSFPEELLVITGRDPSPCEAEALRSSLWTHGRMGGLKRDVWNPSCGSVRRTYSYRKLKRVSALSFVWTRPAYKAENERGWFVVPATFQFDEERRGLDELALFRDHWDAGFISLCPLDI
Ga0315841_102421	Ga0315841_1024211	F068314	QQTRSSGNAVGTSGARPRPALDPLSPALTQPFKDLVGKGIIAELSVKFTPMGVEIKGKASLKLAEVEGSGLNTTDYFPLALLSGVAEKGGLSFNPRDKKKSGGHGPAQVKPAKTLVPADLDGSLNEAALQNRINAIAKACGGGPLVGRVRSEGAFTGSETTSYHDWWDAAPASLRALSLTEGKRRKELTSDHVGRLANLQCPFRGALEFEVSAGDEEEEVQTSSSKPAAPATGKQSPKK
Ga0315841_102716	Ga0315841_1027162	F078016	ASDNLNMNLTRVMLSAIRSNSSYVPVSVWDAATTSLSSVFPGGETQQHGQMMGSLLCFPLLCLANYLSFRYSIPRPVPVLINGDDIAFRCRTNEKDAWVRNVGKSGLVLSVGKTMFHKSVFSLNSTYFISSKSSGPRFAPFIRSSCLFSRVEDTGEVAGRLKGCVVGSGLFREKVQTFLLKNIIAGVFSTQRSLRRGLGCTLSNRVIRWSQLSEREDFYLSLSSEPSVPLRKRLWMHNSIPDGYVRCVGVEDDESFSSNMIETAWSRPPIHGGKQTDDEYWEYVRRGTFRYSPFSAYKFWLVAGGVGERPEPTLQCRRAEKMGWKKQREGGIAFVSAGFI
Ga0315841_103398	Ga0315841_1033981	F102267	MAAQQRQETRTGGNAAGGPSPKARPALDPRVPVLVQPFKGLVENGVITELSVKFSSMGTEVKGKASQRLVDVEKSGLNTTDFFPVGRLLEVAEMGEDPVLKRPGKKGNKGAGGPAQVKPARSLCKEDFTLAPAALQQRANEIARACGGGPLVGRVRSAGRFDGTETVSYREWWDSA
Ga0315841_105895	Ga0315841_1058951	F094696	MSVLNLEKLPRREGGKVLQRNAEQRDGSVVSIDLWNEISNLDNDKLEAVMKIASTEVDYELTSFIRAIEYQGFDRLFYIKTALSKMSVSIFCRFAILGAIRGSNFTRIVESCEQMPPDMVSAFTSCGFVKTPKKRDHITILRNTASIPHWCVYYMNKANIAKKLNADCPAALQFPGAASLPMSRTVRMQHIAFCQAFSSLLPGGKFRLSIYITAMSNLIPVSDIPQSVLTILSVSSNSESHRLTDEELNALGAQLVSAK
Ga0315841_106813	Ga0315841_1068132	F065812	MGVKLLLRLNIYGKPIANKYCEGKVKITLKRGLKDLKSLRRKQ
Ga0315841_107496	Ga0315841_1074961	F100085	AMAWFSWNIGKIRPLGITTYDLGFRGPLAYRATKKFGLSTTLTHTPVPSLSISNGLSLTTSGCEFVDPAELSDEDKVVNLRELASWKWRTEFCVTSAKQAAMRFHLAVSATRHDCPSFKSLLWGSDLGDLTRKWHSAKMFSKPVEKRNRGFPVLAGYVGKLPSYDDVMAGETDVGSVELLTKEKKK
Ga0315841_107649	Ga0315841_1076492	F041531	VADFPGMIHMAKAVMVAPGFVDAFQRCRIGRRWGFLPSQLGHTTYPAYKRERGLRVRRAWTPLPEPSDDVEFPEELVRITGRDPTPVEAEALRVVMWTHGRWGGSKRDVFSPSCGKVRRSYRYRAQPCWSSLSFVGSGRPKLSPLREKGGEMSLVPASFISDEESRGIADLEQFRRNWDRGFIISDLEALDRDR
Ga0315841_108134	Ga0315841_1081341	F043722	MLAIRLGLPLGAPEAYGGIGLPIAPKRSSTDHVRWLSYLSQRPKDELVIGLGLSPLGRSGQSLLDRAASGWVREVLASDVQWASEGLELLSPLALSDDAQLRLSLSEGYRKSVSRIRSVEFYFRAPPGTLEPHAPSVRMSVDRFRRKVSGAVILGSKMKYANTVRDLERKMQIFFTTSGGFLPDPWAKPSSVYGLERSTEVKVRWKAPWLLGVG
Ga0315841_108237	Ga0315841_1082371	F014470	VRRTWTALPEPTDVVLFPEELDRITGRDPTPVEAEALRVVMWKHGRWGGSKRDVFSPSCGKVRRSYHYRAQPCRSHLSFVGPGRPKLSPLGEKGAGYALVPSSFMSEEEMRGLADLEQFRRNWDRGFILSED
Ga0315841_109111	Ga0315841_1091112	F009606	VEYCIENGRGPNVVRTKAKPKVNPVTGANFEFVNEPRIGDSIVVVLAGPSGVQSFTFHHPIGVTDVDGEDWVCTPTADIPSLLARRDDPDEADRKAKRDRYRLHLAVVAGLLKKDDDDDQLVYPDTEINRQDALAAARAAAKDAVKAEKGKTPPDLYIRFLPQAVQEKEVAIRDKLAAK
Ga0315841_109559	Ga0315841_1095591	F014470	PAYIRERGLRVRRTWTALPEPTDVVVFPEELDRITGRDPTPVEAEALRVVMWKHGRWGGSKRDVFSPSCGKVRRSYHYRAQPCRSHLSFVGPGRPKLSPLGEKGAGYALVPSSFMSEEEMRGLADLEQFRRNWDRGFILSED
Ga0315841_110697	Ga0315841_1106971	F068314	QQTRSSGNAVGTSGARPRPALDPLSPALTQPFKDLVGKGIIAELSVKFTPMGVEIKGKASLKLAEVEGSGLNTTDYFPLALLSGVAEKGGLSSNPRDKKKSGGQGPAQVKPAKTLVPADLDGSLNEAALQNRINAIAKACGGGPLVGRVRSEGAFQGSETTSYRDWWDAAPAPLRALSLTEGKRRKELTPDHIGKLANLQCPFRGALEFEVAAGDEEEEVQTSSSKPPATSAGKQSPKK
Ga0315841_111376	Ga0315841_1113761	F026808	TLFTLHLHLHHITLTSTLLALTMPRQQGKRKSGGPRRSSGGARAPAFVFEPGEQRLRLDDLFASVTLEEGEVEGSVSLGGLTFPPSSARVLGWTITVSAVSGDVQFRTGVGHAKTARVVVPCAFPRPAAVSAPDVLLVGPENTTFGVFGSITVYYKSQ
Ga0315841_112433	Ga0315841_1124331	F102187	MLHVYTAIVMTLHHGNDAKRGACAAPTITMLYPYDLVIYPTFSFLSYSLTHRRLCHNAWTALGVTSLLHPHTQGIATRVTKTKFRLFPLGLGGWNGRESWGWLRTSCTRTRIFLVGDDDFLHPFPSVTCPPFVCIYGVCEGNISLAFQRRLYTGSFSSFFDITVARQSRAALGVRDAWLRAFLSFPVVYSERKSFVPTFVSRVYDNNRDYGVEKGNGNTCRHACWCTSMARRSGICMYTTSKSRVQFQNFHSL
Ga0315841_112533	Ga0315841_1125331	F025888	GVEYIMESIVYVPILPIVAEEKGLKTRFPTCSLTAVNLVQQILRRVADHVMIRDPRFSEALGGDLRVDMRGEDGPWESQDCTAATDLHPEWLTRGFYEELAERYPCLLPYKRWFPKLFGPKKILSSKPDDLLPSALLEEYSRAPLLDDDLLRPSRLRRGRNGLGHADHILEMWSDWLSMLNGLPGTITSTGQMMGDPTSFPPLMLVSLCSAEQTLKVYPYTTKERRRRYRGLKPSEAKLKGVGDDAVLPRW
Ga0315841_114507	Ga0315841_1145071	F044246	SRFLSFLLLQGKERTSVAFPRRQRRGENGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSTRSHWEATACSQPPPPSPEYLEHVRRVVTGTFRPGWDRNYHSFVGNHVPNPSARACKGRADALWAGRRGEFFTATTSECEVIPPVLTGRYKDILSTGKTRPMLIFDESVELLAPLHKLLYSHLAKQDWLLCGPPTDKKMTSVLTGAVQTSVDLVAATDGLNLTVTEAILD
Ga0315841_114587	Ga0315841_1145871	F028052	MDVDSFVRNASIVEKVVFLDFYGAEMNTSPMVCLDEDLYVVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDEPEEPVSKESPVTPPTGGFPGTDPRCGTERTARWIHDQVATSGDRTVSRFLEENPSRKLTGTPDYKFLAICPTGPHRRSKSADETQRIGLDGSLVPLRQRDVWRDHRIRPPNSSDIPPR
Ga0315841_115616	Ga0315841_1156161	F049431	GRINQVTILSPSAEAREQTPRGRPGCTGRKGRRRSEPQPQASEVCETPKPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETNRTSVPSTSTLQLPEGGQHRASRKELPSPK
Ga0315841_115708	Ga0315841_1157081	F018299	LLYFCFYTLISTASPMNLFPCLDSESGELTVSSDNLNIGTILSELAFFLELSVVFMSKLGETELARNDDLLSTGELELASSESFNSMGNVLFNKSDGVQDLVDLDSGDLTDGLTVGTSHTGLKSISTGTGKHFVNSDNVPRVDSASQVETFLTTLLDKVLVGSDTGSFHGFGGDLFLFKGDKVDSVGEFFDFSSLLTSIINSDSGIGDTSVITRLGERLSTPVSV
Ga0315841_116321	Ga0315841_1163211	F015954	GDDTLVSANRYLEVSDYPSGYIMNDLKTIRSETIAEINSTGFLRGRGGRWREIRHLRRGGFLTDYAGMLHAAKAVAGSIVWTDAFIRSRIGKKWGFLPSQLGLHPKSYVAHERHRSMWNRSFTCLPSPPKGDSTLLLAVRRRLDPDEQVALYLHQWATGREGGRKRDVFNPSVGYVRRTYAYRAVKPWSRLSYLGKLRALKVPAHRGEEELRFLPADYVSIR
Ga0315841_117426	Ga0315841_1174261	F063215	MVSTSSSLRPKNKDGSRGTPRHCRAFRARTSQYVRRALADWGYIFGCPAPTFHPTGECHEVAASVKKLLGNCPSDDPREVMAWQSIKKGLPPSCVCMTAPLMAKLVEGFARPKRDLPAGYLRFVQQQTLRLFPKGWDLGYEEQVLLTSPPLSSTIENSRANGGCLGSGIDHDAFLNEALSGPFRPERERPEAELILVQSAGKP
Ga0315841_117711	Ga0315841_1177111	F006377	VGRTLGGTDTGLTMGSGLVGETEFTHVSSDHVELDFDVSVFLTGVDTNNGSDHFGKNNSVSEVSLDGVGLVTRLEVLLGLSELLNESLVFMLETSVESSLDSGTEEFNELFVLKGREIFEGETSEGIFLSGTFSSLLTHCN
Ga0315841_118045	Ga0315841_1180451	F075487	QWTQSHDLPLASRVVERVRDAIMGPSTPLCEGIDGHSVPCRWTPCPHETSALLRSQASGYTNDVPVCLDDRCAWRTPLGGWLSGEQRRVSTSSTSRWWPWGASSPDDQSPSNGGFYATLGKYTVLAVGAAVAIGVGWAWARWRGDSPPSEPDLERGTESAGRSKGAQKAPLPRRGAGQSPASSRPSTPPPKRPKKGNKK
Ga0315841_118693	Ga0315841_1186931	F025888	NLVQQILRRVADHVMIRDPRFSEALGGDLRMDMRGEDGPWDSQDATAATDYHPEWLTRGFYEELADRYSSLAPYRRWFSKLFGPKKILTCDPTLCEPVSLLTHYPKAPLLDDHPAEMFHGVRVKKMGPGLTGLGHAEDILLYWNDWLDDLNGLPGTITTTGQMMGDPTSFPPLMLVTLCSAEQTLEVYPYTPKERRRWYRGLNRTDA
Ga0315841_118812	Ga0315841_1188121	F044843	GPPTEKKISSACVYPCQTSVDLVSATDNLSLEVTEAILGSLLRKSIIIPGPVRLRAFQSLRPLVDCAGEEKEVSHGQMMGSYLSFPLLSLHSYLAALWALRGEEGNVLVNGDDTLVSSHRYLEVSDYPSGYKLNDLKTIRSETVAEINSTAFLKGRGGKWREIRHLRRGGFLADYPGMLHAAKAVAWSVPWTDAFIRSRIGKKWGFL
Ga0315841_119018	Ga0315841_1190181	F028052	SKMDVDSFIHSASVVEKVVFLDFYGAEMNTSPMVCLDEDLYIVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDGAEEPAPKESPVTPPTGGFPGTDPRGSTERTTRWIHDQVTTSGDRTVSRFLEENPSKDLTSTPDGKFLAIRPTGPHRRSKSADETQRIGLDGSLIPLRQRDVWRDHRIRPPNSSDIPPR
Ga0315841_119383	Ga0315841_1193831	F028052	VVFLDFYGAEMNSSPMICLDEDLYVVYHDTQAYVYTPRMFQEYMRRCKAAEVCALYPDSDNAEEPVLKESPVTPPTGGFPGTDPRGGTERTARWIHDQVATSGDRTVSRFLEENPSKDLTSTPDGKMAIRPTAGHRHSKSDGDTQRIGLDGSLIPLRQKDVRRYHRIRPPNSSEIPTR
Ga0315841_119420	Ga0315841_1194201	F033655	VLGLLGSVTFNNEVRKVSLADSLKHFLSILSDSNSVDVDLRLFGNVVQSSFSFFFLDLKGDTSDGSSLDSLHQVSSETSDLISHSLGGKDGNITEDDLVEVEVVGELAVVLFDQNLSGSLDGLSLNSAHYLKILFVS
Ga0315841_119657	Ga0315841_1196571	F044246	LLQGKERTSVAFPRRQRRGETGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSARPQWEKTACSQPPPPSPDYIAHVRRVVAGIFCPGWDRNYHSFVGNHVPNPSARACKGRADALWAGRRDEFFIASTSESEVVPHSLSGRYKDILSAGKTRPMLIFDEHVELLAPLHKLLYSHLAKQDWLLCGPPTEERMASVLVN
Ga0315841_119959	Ga0315841_1199591	F044246	SRFLSFLLLQGKERTSVAFPRRQRRGENGLCSLQRLCRRDRWALAHACSSIKRNLPKSCRRHTPSMRSHWEATACSQPPPPSSDYLEHVRRVVTDTFRPGWDRSYHSFVGNHVPNPSARACKGRADALWAGRRGEFFTATTSECEVIPRGLTGRYKDILATGKTRPMLIFDESVELLAPLHKLLYSHLAKQSWILCGPPTE
Ga0315841_119996	Ga0315841_1199961	F008406	AWFSWNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRQGPSLQKIPSLKVENGLSLTCEYVDPDLLDQDEKKENLAELAAWKWRTAFQVSSRSRELMDLYLAISSTRRDAPDFKPYLYGGESGVLTRNVGGAKIFRQRVKTIDRGFPLLIPMRGKLPTYEEFLAGEVDVGSVEPLAKKK
Ga0315841_120524	Ga0315841_1205241	F018668	FKQSIQSNNTHTRFFTNTLHQKTQSTKMAFFKSLLIASVAAVAFAVPQSGASDGNKKVEIDSSSNEAKCGNGSKIACCNSGEDLIGLNCLSVPILAIPIQQACGSNVAACCPTGDADGNAINLEANCIAIPL
Ga0315841_121098	Ga0315841_1210981	F032498	VEIPSTAFLKNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPRSYPAHERERSMSNRSFTCLPGPPTEVSTSLLAVRRELDPDEKIAMYLHQWRYGREGGRKRDVYNPTVGCVRRTYAYRAVKPWSRLSYLGKLRSLKLTARREEEELRYLPADYVSKREDEILNEL
Ga0315841_121362	Ga0315841_1213621	F104141	LPSLLQQRDQEVNGHVDVLSEFFFSEVDSSDSGTHTEDLLQLESNGGLDFLDLVFDLFVFTDSDGELADLVEGVTHELGDLLHEGFRSDQDIKRLGPLLDELFILVELLSTIDIDATDIDLLGLVTVDGSTDETDLSVGGGDVGESDGTVETLILLGVVVSETDLEFYGLSELSLLSVGH
Ga0315841_121919	Ga0315841_1219191	F008406	WNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRQGPSLQKIPSLKIENGLSLTCEYVDPDLLDQDEKKENLAELAAWKWRTGFKVSSATRASMDLYLAVSATRRDAPNFKPYLYGGESGVISRNVGGAKIFRQRVRVIKRGFPLLIPMRSKLPTYEEFLAGEVDVGSAEPLVKKK
Ga0315841_122849	Ga0315841_1228491	F030309	PVPSDVWSSLSNKERAAEMAKRSIPRWASEAVLRSAGNLQLIVEGKLTKENANSAARTPKIAVTKATGQAMEAWQQLKSDFKGTPLYRNPSTAKEKAFKKRFDQLVVSYGQQPCFPKLRERPDQQGRSPSRGRKPSSAGGDFLQMAKAFGEIARAFSGKSG
Ga0315841_123039	Ga0315841_1230391	F045460	KEVMAWQSIKKGLPDSCECMTGPLMEKLVEGVRRPRRQLPVGYLRFVAQQTSRLFSKGWDLGYEEQVLLTSPPLSATTDSTRSEGGALGTGIDHDSFLTEALRGPSRPDRPAPEAELIVVQSAGKPRPLTKFSSDELLLRPLHKTIYNHLSRCKWLSRGDVSDEGLAKAGFRQEKGILTSGDYASATD
Ga0315841_124365	Ga0315841_1243651	F022330	LHFVVEDQDKGSTSTSEDVGKSTLEESLTTFLAVDLGETVEGTGVEDFLLARLHHQSSSDGIKRVGEETGDGGDNLGNKELVEDGGLGVRQEGSLGGIVTTEVASSVSDDTEDGDTETLVKSLNTINSSDLVDT
Ga0315841_124417	Ga0315841_1244171	F033655	LGLGSVSFNDETRKITLANSLKHFLSVLSNSNSVDVDLRLFRNVVQSSFSFLFLDLKGDTSDGSSLDSLHQVGSETGNLISHSLGGENSDITQDDLVEVEVVGELTVVLFDQNLSGSLNSLSLNSAHFSDRYCF
Ga0315841_125734	Ga0315841_1257341	F037504	TIDITNSSKQLKNPHLLKANMQFSQVFFVAAVIASATAAPTGDLEARTSGGIQCQKHEGKWKYGWEGATPSEKYTCATGGLINILTCVNILNGNTVNVDLLNILGL
Ga0315841_126327	Ga0315841_1263271	F030309	PRWASEAVLRKSSNLQLIIEGKVTKETAQQAPRDPKKISALKANGQALEAWQQLKSEFKGTPLLKKPASSKEKAFKKRFDSLVSTYGQQPCFPKLRERPDQQGRSSSRGRSRSSGPGGDFLEMAKAFGEIARAFSGRSN
Ga0315841_127051	Ga0315841_1270511	F014470	VRITGRDPTPVEAEALRVVMWRHGRWGGSKRDVFSPSCGKVRRSYRYRAQPCKSYLSFVGSRRPKLSSLCEKEGGMNLVPATFVSDEESRGLEGLEQFRRNWDRGFISNGD
Ga0315841_127123	Ga0315841_1271231	F098370	GKKWGFLPSQLGLNPRSYPAHERERSMSNRIFTCLPGPPTEASTSLLAVRRELDPDEKIAMFLHLWDHGREGGRKRDVYNPTVGCVRRTYAYRSVKVWSRLSYLGKLRSLKVTARREEEELRYLPADYVSKREDEILAELKRYNSVVFKDL
Ga0315841_127338	Ga0315841_1273381	F037504	QTNQLPLPNHPSANMQFSKIFLVAATVASAAAAPTGELETRTAAPIKCQHHGGKWKYGWEGAADNEKYTCNTAGLLNVLTCVNILNGNTVNVNLLSILGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031101: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T18 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences