Basic Information | |
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IMG/M Taxon OID | 3300031133 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133512 | Gp0324019 | Ga0308163 |
Sample Name | Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R1 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 930118898 |
Sequencing Scaffolds | 0 |
Novel Protein Genes | 11 |
Associated Families | 1 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Ecosystem Assignment (GOLD) | |
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Name | Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States |
Type | Host-Associated |
Taxonomy | Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Unclassified |
Location Information | ||||||||
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Location | USA: California | |||||||
Coordinates | Lat. (o) | 37.8864 | Long. (o) | -122.2981 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F081964 | Metagenome | 113 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Scaffold ID | Protein ID | Family | Sequence |
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Ga0308163_10000639 | Ga0308163_1000063927 | F081964 | VSQPVVSYRHAIIRAVTGNRPAMVFHVVDETALRSICERLAESERAFEILRAKGYGKSGQLLHEVAALVLNAS |
Ga0308163_10003191 | Ga0308163_100031914 | F081964 | MTMPIACYRDQVIRAVTGNQPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGRTGLLLDELAALVPAKT |
Ga0308163_10010406 | Ga0308163_100104064 | F081964 | MSMPVEVYRDQIIRAVTGNQPAMVFHVVDEAALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPSKDFV |
Ga0308163_10023108 | Ga0308163_100231084 | F081964 | VSQPVVSYRHVIIRAVTGGCPAMVFHVVDETALRNICERLAESERAFEILHAKGYGRPGLLLQEVAALVPNAC |
Ga0308163_10029748 | Ga0308163_100297486 | F081964 | GKPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPVKT |
Ga0308163_10040288 | Ga0308163_100402884 | F081964 | VSMPIVCYRDQIIRAVTGNQPAMVFHVTDETALRRLSERLAESERAHALIRAKGYGSTGMLLDELAATIPNKDPTWTKC |
Ga0308163_10067821 | Ga0308163_100678213 | F081964 | MRRAAFSFQGVPVSQPVVSYRHAIIRAVTGGRPAMVFHVVDETALRNICERLAESERAFEILRAKGYGKSGQLLHEVAALVPNAS |
Ga0308163_10072120 | Ga0308163_100721201 | F081964 | VRCFRYAIIRAVTGNCPAIVWKVIDDAALNRICERLAEAERAFEILRAKGHGKPGLLLHEVAALVPDACG |
Ga0308163_10087355 | Ga0308163_100873553 | F081964 | VSQPIDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDIK |
Ga0308163_10143738 | Ga0308163_101437383 | F081964 | VSQPVDCYRHAIIRAVTGNRPAIVWNVTDRAALDRICERLAESERAAEILQAKGYGRPGLLLHEVAALVPSSPSRDPKGV |
Ga0308163_10409365 | Ga0308163_104093651 | F081964 | VSQPVDCYRHAIIRAVTGNRPAMVFHVVDETALRHICERLAEAERAFEILRAKGHGKSGLLLHEVAALVPNAS |
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