NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031134

3300031134: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLB.R2



Overview

Basic Information
IMG/M Taxon OID3300031134 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133512 | Gp0324014 | Ga0308158
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLB.R2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1146060825
Sequencing Scaffolds0
Novel Protein Genes15
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308158_10001401Ga0308158_1000140114F081964MPTECYRDQIIRAVTGNKPAMVFHVVDETALRRLSERLSEAERAATILQAKGYGADGLLLDEVAARVPAAHTHDTR
Ga0308158_10001469Ga0308158_1000146922F081964MPVEVYRDQIIRAVTGNQPAMVFHVVDEAALLRLCSRLAEDERAHALLLAKGYGGTGLLLDELAALVPNAR
Ga0308158_10001530Ga0308158_1000153037F081964MSMPVEVYRDQIIRAVTGNQPAMVFHVTDETALRRLSERLAESERAHALIRAKGYGSTGMLLDELAALVPSKDCV
Ga0308158_10004061Ga0308158_1000406110F081964VSQTVQCYRHAIIRAVTGNRPAIVWNVIDGTALNRICERLAEAERGFEILQAKGYGKPGQLLHEVAAQVPAAHMRDSR
Ga0308158_10004785Ga0308158_100047858F081964VSQPVDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRTKGHGRPGLLLHEVAALVPDVK
Ga0308158_10005331Ga0308158_1000533113F081964MRTPVEVFRDQIIRAVTGNQPAMVFRVIDEAALQRLSDRLAEAERAHALLRAKGYGGTGLLLDELAALVPKAS
Ga0308158_10005821Ga0308158_1000582112F081964MPIACYRDQIIRAVTGGKPAMVFHVVDETALRRLCDRLAEAERAVEILRAKGHGQPGLLLDELAELVPAIK
Ga0308158_10012141Ga0308158_100121412F081964MPIVCYRDQIIRAVTGGKPAMVFHVVDETALRRLCERLAEAEQAVEMLRAKGYGHPGLLLNELAAAIPSKEPT
Ga0308158_10015379Ga0308158_100153792F081964VSQPVDCYRHAIIRAVTGNRPAMIFHVVDETALRHICERLAEAERAFEILRAKGHGKSGLLLHEVAALVPNAS
Ga0308158_10050852Ga0308158_100508524F081964MPIVCYRDQIIRAVTGGKPAMVFHVVDETGLLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPVKT
Ga0308158_10082973Ga0308158_100829732F081964MRFVWPRTAVYPAMRTPVERYRDQIIRAVTGNKPAMVFHVVDETALRRLCERLSEAERAATILQAKGYGASGLLLDEVAARVPAAHTHDSR
Ga0308158_10095586Ga0308158_100955862F081964VSMPIVCYRDQIIRAVTGGKPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPVKT
Ga0308158_10175990Ga0308158_101759902F081964MCRASGRSSVSQPVDCYRHAIIRAVTGNRPAIVWNVTDCAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDVK
Ga0308158_10301837Ga0308158_103018372F081964MRTPVGVFRDQIIRAVTGNKPAMVFHVVDETALLRLCNRLAEAERAHALLRAKGYGGTGLLLDELAALVPKAS
Ga0308158_10460733Ga0308158_104607331F081964AVHRAAPARAGRRRDRRRMTTATCYRQQIVRAVTGSLPAITWSVTNSGALDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPGIK
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