NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300031413

3300031413: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R2



Overview

Basic Information
IMG/M Taxon OID3300031413 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133512 | Gp0324020 | Ga0308164
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLT.R2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1145796244
Sequencing Scaffolds0
Novel Protein Genes15
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308164_10001075Ga0308164_1000107532F081964MRRAAFFIQGVPVSQPVDCYRHAIIRAVTGNRPAIVWNVTDRAALDRICERLAEAERAAEILQAKGYGRPGLLLNEVAALVPDKP
Ga0308164_10001169Ga0308164_100011698F081964MRRAAFFFRGAPVSQPIDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDIK
Ga0308164_10013515Ga0308164_100135156F081964MPIVCYRDQVIRAVTGGKPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPDVK
Ga0308164_10027578Ga0308164_100275781F081964MPIVCYRDQIIRAVTGGKPAIVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPVKT
Ga0308164_10076011Ga0308164_100760115F081964VSMPIVCYRDQIIRAVTGNQPAMVFHVTDETALRRLSERLAESERAHALIRAKGYGSTGMLLDELAATIPNKDPK
Ga0308164_10080447Ga0308164_100804472F081964VSQPVDCYRHAIIRAVTGNRPAIVWNVTDGAALTRICERLAEAERAAEILQAKGYGKPGLLLHELAATIPNKELK
Ga0308164_10082241Ga0308164_100822412F081964MSKEVEVVYRDQIIRAVTGNQPAMVFRVVDEAALRRLSDRLAEAERAHALLRAKGYGGTGLLLDELAALVPNAS
Ga0308164_10086546Ga0308164_100865463F081964VSMPIVCYRDQIIRAVTGGKPAMVFHVVDETALRRLCERLAEAEQAVEMLRAKGYGHPGLLLNELAATIPNKEPT
Ga0308164_10089711Ga0308164_100897112F081964VSQPVVSYRHAIIRAVTGNRPAMVFHVVDETALRSICERLAESERAFEILRAKGYGKSGQLLHEVAALVPNAS
Ga0308164_10119005Ga0308164_101190051F081964MRRAAFLLGAQVQTVRCFRYAIIRAVTGNCPAIVWKVIDDAALNRICERLAEAERAAEILQAKGYGKPGQLLHEVAAQVPAAHMRDSR
Ga0308164_10252543Ga0308164_102525432F081964MPIVCYRDQIIRAVTGGKPAMVFHVVDETALRRLCDRLAEAERAVEILRAKGHGRPGLLLDELAALVPDIK
Ga0308164_10262378Ga0308164_102623782F081964MTMPIACYRDQIIRAVTGNKPAMVFHVVDEAALQRICERLAEDERAAEILQAKGYGKPGLLLHEVAALVPAKP
Ga0308164_10266619Ga0308164_102666192F081964TGNRPAIVWNVTDCAALDRICERLAEAERAFEILRAKGHGRPGLLLHEVAALVPDVK
Ga0308164_10273083Ga0308164_102730833F081964DQIIRAVTGGKPAMVFHVVDETALLRLCERLVESERAHSLLRAKGYGSTGMLLDELAALVPDVK
Ga0308164_10374517Ga0308164_103745172F081964VSQPVVSYRHAIIRAVTGGRPAMVFHVVDETALRNICERLAESERAFEILRAKGYGRPGLLLQEVAALVPNAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.