NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031417

3300031417: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSB.R2



Overview

Basic Information
IMG/M Taxon OID3300031417 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133512 | Gp0324026 | Ga0308170
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSB.R2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size999143447
Sequencing Scaffolds0
Novel Protein Genes4
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308170_10000016Ga0308170_10000016396F081964MTTATCYRQQIVRAVTGSRPSITWTVTNSGALDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPGIK
Ga0308170_10057503Ga0308170_100575033F081964VSQPVVSYRHAIIRAVTGGCPAMVFHVVDETALRNICERLAESERAFEILRAKGYGRPGLLLQEVAALVPNAC
Ga0308170_10106647Ga0308170_101066474F081964DARARAVRTRAPHHPGYTMSMPVEVYRDQIIRAVTGNQPAMVFRVVDEAALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPDKS
Ga0308170_10349454Ga0308170_103494541F081964RSRPSLHKTCRASGRSRVSQPVDCYRHAIIRAATGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGMLLHEVAALVPSA

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