NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031420

3300031420: Phyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSB.R1



Overview

Basic Information
IMG/M Taxon OID3300031420 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133512 | Gp0324025 | Ga0308169
Sample NamePhyllosphere microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLSB.R1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size1050342125
Sequencing Scaffolds2
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLeaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)37.8864Long. (o)-122.2981Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004571Metagenome / Metatranscriptome433Y
F055227Metagenome / Metatranscriptome139Y
F081964Metagenome113Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0308169_10439849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria552Open in IMG/M
Ga0308169_10477701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0308169_10005210Ga0308169_100052102F081964VSQPVDCYRHAIIRAVTGNRPAIVWNVTDGAALDRICERLAEAERAFEILRAKGHGRPGMLLHEVAALVPSA
Ga0308169_10142304Ga0308169_101423042F081964MSMPVEVYRDQIIRAVTGNQPAMVFRVVDEAALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPDKS
Ga0308169_10439849Ga0308169_104398491F004571MTSMRLPRPRHGDPLQTTQELRALASAILQDDIQTLARTTAYLRRSYRVVFVGYVAMMVFGVAAIVAAFVKGLTASSLAEAITSVGLAGLTVGIFVAFFVQRPSAALERNAIFMPWVSIVLTTFWTRLLYLDDEATLDAKLGHAAKEASEELSAIAMRYAVIDG
Ga0308169_10477701Ga0308169_104777011F055227MERVAVLDIAGKPVELQIRRSNRVRGHRIVVRYGLPPELVVRPRATDAQIDEAIDFHRSWLERQLAKAVEPRLGLEKLRL

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