Sample 3300031425

3300031425: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T14 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300031425 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0134331 \| Gp0333247 \| Ga0315831
Sample Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T14 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	25155116
Sequencing Scaffolds	39
Novel Protein Genes	43
Associated Families	33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	10
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	1
Not Available	15
All Organisms → cellular organisms → Eukaryota	4
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Aspergillus creber narnavirus 1	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 88	1
All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis	1
All Organisms → Viruses → Riboviria	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Metschnikowiaceae → Clavispora → Clavispora lusitaniae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Plant Litter Microbial Communities From East Loma Ridge, Irvine, California
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7042	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F004023	Metagenome / Metatranscriptome	456	Y
F006461	Metagenome / Metatranscriptome	372	Y
F009606	Metagenome / Metatranscriptome	315	Y
F012845	Metagenome / Metatranscriptome	276	Y
F014470	Metatranscriptome	262	Y
F015954	Metagenome / Metatranscriptome	250	Y
F022330	Metagenome / Metatranscriptome	214	Y
F023769	Metagenome / Metatranscriptome	208	Y
F025888	Metagenome / Metatranscriptome	199	N
F028052	Metatranscriptome	192	N
F030309	Metagenome / Metatranscriptome	185	N
F030315	Metagenome / Metatranscriptome	185	Y
F033276	Metatranscriptome	177	N
F037504	Metagenome / Metatranscriptome	167	N
F039430	Metagenome / Metatranscriptome	163	Y
F041531	Metatranscriptome	159	Y
F043722	Metagenome / Metatranscriptome	155	N
F044246	Metagenome / Metatranscriptome	154	N
F045460	Metatranscriptome	152	N
F050038	Metatranscriptome	145	Y
F054554	Metagenome / Metatranscriptome	139	Y
F057136	Metagenome / Metatranscriptome	136	Y
F068314	Metagenome / Metatranscriptome	124	N
F072940	Metagenome / Metatranscriptome	120	Y
F078016	Metatranscriptome	116	N
F080696	Metagenome / Metatranscriptome	114	Y
F080697	Metagenome / Metatranscriptome	114	Y
F083663	Metagenome / Metatranscriptome	112	Y
F089598	Metatranscriptome	108	N
F094696	Metagenome / Metatranscriptome	105	N
F102187	Metagenome / Metatranscriptome	101	N
F104142	Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0315831_100512	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	2130	Open in IMG/M
Ga0315831_100513	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	2127	Open in IMG/M
Ga0315831_101362	Not Available	1557	Open in IMG/M
Ga0315831_102577	All Organisms → cellular organisms → Eukaryota	1222	Open in IMG/M
Ga0315831_102910	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	1161	Open in IMG/M
Ga0315831_103080	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	1130	Open in IMG/M
Ga0315831_103769	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Aspergillus creber narnavirus 1	1036	Open in IMG/M
Ga0315831_104433	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	960	Open in IMG/M
Ga0315831_105522	Not Available	860	Open in IMG/M
Ga0315831_105676	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	847	Open in IMG/M
Ga0315831_105997	Not Available	825	Open in IMG/M
Ga0315831_106375	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 88	799	Open in IMG/M
Ga0315831_107338	Not Available	749	Open in IMG/M
Ga0315831_107489	Not Available	742	Open in IMG/M
Ga0315831_107592	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	738	Open in IMG/M
Ga0315831_108304	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	708	Open in IMG/M
Ga0315831_108543	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	700	Open in IMG/M
Ga0315831_108808	Not Available	690	Open in IMG/M
Ga0315831_109245	Not Available	676	Open in IMG/M
Ga0315831_109452	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis	668	Open in IMG/M
Ga0315831_109573	Not Available	665	Open in IMG/M
Ga0315831_110046	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	649	Open in IMG/M
Ga0315831_110266	All Organisms → Viruses → Riboviria	642	Open in IMG/M
Ga0315831_110327	Not Available	640	Open in IMG/M
Ga0315831_110545	All Organisms → Viruses → Riboviria	635	Open in IMG/M
Ga0315831_110602	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Saccharomycotina → Saccharomycetes → Saccharomycetales → Metschnikowiaceae → Clavispora → Clavispora lusitaniae	633	Open in IMG/M
Ga0315831_110689	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	631	Open in IMG/M
Ga0315831_110706	All Organisms → cellular organisms → Eukaryota	630	Open in IMG/M
Ga0315831_111346	Not Available	613	Open in IMG/M
Ga0315831_112196	Not Available	593	Open in IMG/M
Ga0315831_112619	Not Available	584	Open in IMG/M
Ga0315831_113047	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	575	Open in IMG/M
Ga0315831_113832	Not Available	560	Open in IMG/M
Ga0315831_114297	All Organisms → cellular organisms → Eukaryota	551	Open in IMG/M
Ga0315831_114480	All Organisms → cellular organisms → Eukaryota	548	Open in IMG/M
Ga0315831_115337	Not Available	532	Open in IMG/M
Ga0315831_116070	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	518	Open in IMG/M
Ga0315831_116503	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	511	Open in IMG/M
Ga0315831_116953	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0315831_100512	Ga0315831_1005121	F050038	MTSGTPRRCTAASVKPNTGSEAKTCRSCLRANYDTRETISNGLRLIRIKYGLPYVELPDLRPGELSRFLSFLLLQGRQRPSVKFPRRQRPSSDGLSTLQRLRKHERWELAHSVSSIKRNLPAGCLLCASTERSSWEANAFSLPPSPPSDYLRFVRKEVSKIFPYGWDRNYDDFVWRHVPNASARMNQPRADLYFAGKGKSFRRQCLTGKSIPIDEPVRARYKAVMSAGKSRPLVIYDESVEILAPLHKVIDSHLMKLPWRLVGPPTEKVISSACVYPCQTSVDLVSATDNLSLEVTEAILGTLLRKSRIPGPVRLRAFQSLHPLIDCGGEEKEVLHGQMMGSYLSFPLLSLHSYLAALWALGGREGTILVNGDDTLVSSTVFLEASSYPGGYKLNDLKTIRSETIAEINSTAFLRNSKGKWREIRHLRRGGFLTNYSGMLHGAAAVRGSVEWTNAFIRSRIGKKWGFLPSQLGLHPKSYPAFSRERSMSNRIFTCLPGPPKADSTLLLAVRRQLDPDETIAMFLHQWEHGREGGKKRDVFEPSVGSIRRTYAYRAVKPWSRFTFLSKLASLKVTARREEENLHFLPADYVSKREDEVLKELKLYGSKCFEDL
Ga0315831_100513	Ga0315831_1005131	F050038	WLLSSITMTRSGTRIRTTCTATSVKPNIGSEVQTCRGCFRSASDTRETISNGLRLIRIRYRLPGSELPDLEPKELSKYLSYLLLQGKKRAAVVFPRKQSLRRDSDGLLPLMRMLKHERWEFAHSVSSIKRSLPQGCRQHTPSARPAWEQNAFSTPPPPSSDYLQFVRSEVSKLFPYDWDRDYDDFVWRHVPNASARMNSPRADLHWCGNGKEFRRQCLTGRSVPIDQPVRARYKEVMSAGKCRPLVIYDETTEVLAPLHKCLDSHLMRMSWRLVGPPTEKKISSACVYPCQTSVDLVSATDNLSLDVTEAILGSLLRKSRIPGPIRLRAFQSLRPLVDCAGEEKEVSHGQMMGSYLSFPLLCLHSYLAARWALRGEEGNVLVNGDDTLVSSSRFLEASDYPSGYLLNDLKTIRSGTVAEINSTGFLRGRGGKWREIRNLRRGGFQTDYAGMQHAAKAVAGSVAWTDAFIRSRIGKKWGFLPSQLRLNPKSYVAFERGRSMWNRNFTCLPEAPNVPSTLLLGVRRRLDPDEQVALFLHQWATGREGGKKRDVFNPSVGSVRRTYAYRAKKPWSRLTFLGKLAALKVEPARREEELRFLPADYVSIREDIALKELAAYGSSMFEDD
Ga0315831_101362	Ga0315831_1013622	F068314	MSAERNEQQTRSSGNAVGTSGARPRPALDPLSPALTQPFKDLVGKGIIAELSVKFTPMGVEIKGKASLKLAEVEGSGLNTTDYFPLALLSGVAEKGGLSFNPRDKKRTGGHGPAQVKPAKTLVPADLDGSLNEAALQNRINAIAKACGGGPLVGRVRSEGAFTGSETTSYHDWWDAAPAPLRALSLTEGKRRKELTSDHVGRLANLQCPFRGALEFEVSAGDEEEEVQTSSSKSAAPATGKQSPKK
Ga0315831_102577	Ga0315831_1025771	F006461	MRSLAIRLLVLSLFLVAINGWVLTVRNNVNPCAGGNYPTIKLFWAGYAQQDIPEGTDYVFTDGDSQIPATGLGIQENGEYCRCCGNEPPCNNPDNAGMQLVVNQGNCLSYQLNDPFYCGAHPPNAKSIVGVEMSGPWPNCVATLTRLSNAPNCQYSC
Ga0315831_102910	Ga0315831_1029101	F015954	FPLLSLHSYLAALWALGGREGTILVNGDDTLVSANVYLEASSYPSGYKLNDLKTIRSGSVAEINSTAFLKNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPRSYPAYERERSMSNRFFTCLPGPPTEVSTSLLAVRRELDPDEKIAMYLHQWKYGREGGRKRDVYNPSVGCVRRTYAYRAVKPWSRLSYLGKLRSLKLTARREEEELRYLPADYVSKREDEILSELRRFGSSVFEDL
Ga0315831_103080	Ga0315831_1030801	F041531	VADFPGMIHMAKAVMVTPGFVDAYQRCRIGRRWGFLPSQLGHTTYPAYIRERGLRVRRTWTALPEPTDVVVFPEELDRITGRDPTPVEAEALRVVMWKHGRWGGSKRDVFSPSCGKVRRSYHYRAQPCRSHLSFVGSGRPKLSPLGEKGAGYALVPSSFMSEEEMRGLADLEQFRRNWDRGFILSED
Ga0315831_103277	Ga0315831_1032771	F000237	YMHILKKIYLKNYVSAESDGXILGGYAFLXFHYIVALGISLSATHLSDLTLTIIANIYXSLFDNIYKTYYVLFTNKHLNTDQMTRMMMFHYFTPXYYLYLVQLHVLFCHESXDSDSGENTYEDKTGSYISXFYDAFLKELQDAXYXTVLVFIYFXLHHFDALTVNYFFFERXNISELDAIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFVLLAFLPIIYNXYNTYSKHAPAIPMQNSLIQTFAFILFLMSMFCVASMLPAGRYYYEPEGGYVGNPXVKFSFQYMYLYLAXFLHHLDLVDHYMFQFYQVFAKRSSKLYKQYTKIFKTTISKFVNFNNLSEVKHKIIFDQPNYNITLKKFK
Ga0315831_103769	Ga0315831_1037691	F104142	FVLFNVKSFTTMQNANTVNNNTKRGALPPALNPEQPALTQPWRDFVSRGFISAIDVKFTGNATFVGFDLGPLVKTPEGHGREALPAGMAKHFIIESGLWSPKKIGGSKADKKEAVQLPKKSLVPKDLKADETNDSDLKDRAVAVAEALTDTVARGRIGSLKYMRKGVDTFEKWWAGAPNQMKTRLLMDGKHHASLTAADHTRFGSVVTECPFRGPVPTPTEEEEEPEEAPRNGKAIASGAPSSPPKPAKK
Ga0315831_104433	Ga0315831_1044331	F072940	SACWEATRKEGGTAQAILDLMSKYDEMPIPVRDMDTGKVLEYRHKNDFQSIGTAIFFACLDEVLWTEPEELRKVMLTIVREPSKARVVTKGHACLKIVLDTVSKICAWPLKKGFTSSASGMGKSHHGWNLFRDFSTEEMHDLLFSEDRSRRVDDLFNDHIDRTQYWQDLWFCSTDFQEATDRLVHSIARGISRKWMLKCGIPPILQGIVMGVCFQPRKVYFTATGPLSDIGQPSDGDRRVLTLYRGVLMGDPLTKVILHFANIISRKLGEDMSSGQVFKSFRNSSEAFEVFIETSMKT
Ga0315831_105522	Ga0315831_1055221	F057136	MGWEKHKLHEAYRQYAADGRITEHEVKKAVEHAGGGHISEHHAGQLLRSLAGWDGVVTESEFVEGIHRYVEGNRHHW
Ga0315831_105676	Ga0315831_1056761	F014470	EELVRITGRDPTPVEAEALRVVMWRHGRWGGAKRDVFSPSCGKVRRSYRYRAQPCKSYLSFVGSGRPKLSPLCGKGGDMSLVPAGFVSDEESRGLEDLEQFRVNWDRGFILLEN
Ga0315831_105997	Ga0315831_1059971	F009606	PIENGRGPNVVRTKAKPKVNPVTGANFEFVNEPRIGDSIVVVLAGPSGVQSFTFHHPIGVTDVDDEDWVCTPTADIPSLLARRDDPDEADRKAKRDRYRLHLAVAAGLLKKDDDDDQLVYPDTEINRQDALAAARAAAKDAVKAEKGKTPPDLYIRFLPQAVQEKEVAIRDKLAAKATIQAAETKFPSSGYRTRGGPLADRAQSSVEYLEGCSRSQASDAITKRIFG
Ga0315831_106375	Ga0315831_1063751	F078016	TMFHRSVFSLNSAYFISSKSSKPRFAPFIRSSCLFNRVEDTGEVAGRLKGCVVGSGLFREKVQTFLLKNIIAGVFSTQRSLRRGLGCTLSNRVIRWSQLSSREDFYLSLSSEPSVPLRKRLWMHNSIPDGYVRCVGVEDDESFSSNMIETAWSRPPIHGGKQTDDEYWEYVRQGTYRYSPFSAYKFWLVAGGVGKRPEPTLQCRRSEKMGWKKQREGGIAFVSAGFV
Ga0315831_106987	Ga0315831_1069871	F094696	VLNLEKLPRREGGKVLQRNAEQRDGSVVSIDLWNEISNLDNDKLEAVMKIASTEEDYELTSFIRAIEYQGFDRLFYIKTALSKMSVSIFCRFAILGAIRGSNFTRIVESCEQMPPDMVSAFTSCGFVKTPKKRDHITILRNTASIPHWCVYYMNKANIAKKLNADCPAALQFPGAASLPMSRTVRMQHIAFCQAFSSLLPGGKFRLSIYITAMSNLIPVSDIPQSVLTILSVSSNSESHRLTDEELNALGAQLV
Ga0315831_107338	Ga0315831_1073381	F054554	MFGKIKKGLGDAKSSADIETEYLMAKNKNNFDHPAENGVRIKAYQDAFTAADDFYERVKSWADQFKDLIQSEQKMIEKMNASAQLATISSIFSTFTAAQQNVVSLRQQMLGKVQEYIQSPAKKYLSDQTPIRNKIDQTNKAWIELRYWRKKNKSDEEKEAKHAYEKHIEELFRMFDNSIDAQVAQWVKYFADFEVEFFSNAVNVAPRV
Ga0315831_107489	Ga0315831_1074891	F030315	YNEFIIIIKYENILLIVNDIDALKYKYRIGLDTLLVYTVKYEY
Ga0315831_107592	Ga0315831_1075921	F014470	RFWTPLPEPSDDVVFPEELVRITGRDPTPVEAEALRVVMWRHGRWGGSKRDVFSPSCGKVRRSYRYRAQPCKSYLSFVGSRRPKLSSLCEKEGGMNLVPATFVSDEESRGLEGLEQFRRNWDRGFISDGD
Ga0315831_108304	Ga0315831_1083041	F014470	TYPAYKRERGLRVRRAWTPLPEPSDDVEFPEELVRITGRDPTPVEAEALRVVMWTHGRWGGSKRDVFSPSCGKVRRSYRYRVRPCWSSLSFVGSGRPKLSPLREKGGEMSLVPASFISDEESRGIADLEQFRRNWDRGFIISDF
Ga0315831_108543	Ga0315831_1085431	F045460	ALADWGYIFGCPAPTFLPTGGSCLAVASEVKKLLGSCPSDDPREVMAWQSIKKGLPDSCPCMTRPLMEKLVEGFRRPRRDLPAGYLQFVQRQVRGLFPKGWDLGYEEQVLLTSPPLSSTIENSRGQGGCLGSEIDHDNFITEALTGPSRPDRPLPEAQIIVVQSSGKPRPLTKFSADELLLRPLHKTVYNHLSKTRWIARGDVTDDMLARAGFNDCGILTSGDYASATDGLSI
Ga0315831_108808	Ga0315831_1088081	F030309	EGGKSGGSSTPLLAKENPLHIKGEAKSKALSDAERKVLRSFFKLKEDRIPSDEWAAMDNKTRSAAMAERSIPRWASEAVLRKSSNLQLIIEGKITKETAQQAPRDPKKISALKANGQALEAWQQLKSEFKGTPLLKKPASSKEKAFKKRFDSLVSTYGQQPCFPKLRERPDQQGRPSSRGRSRSSGPGGDFLEMAKAFGEIARAFSGRSN
Ga0315831_109245	Ga0315831_1092451	F028052	QLSKGKMDVDSFIHSASVVEKVVFLDFYGAEMNTSPMVCLDEDLYIVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDVAEEPALKESPVTPPTGGFPGTDPRDGTDRTARWIHDQVTTSGNRTVSRFLEENPSKDLTCAPDGKKLAIRPTGDHRRSKSDGETQRIGLDSRLIPLRQRDVRRDFRIRPPNSSDIPPR
Ga0315831_109452	Ga0315831_1094521	F083663	SVSTCALLSVLILVINAQTPTPPTKPLWPDQFISTFGLNIVSSDINNASSTFYSNWEIKAQLVDYPTQCIPFNTAAANQACKIWFLDAGAYISIPEQDICCLWFPGVGAVGPNFLAAFNYSGVIESVQDMYGVNHTCYRWEGSGFLYWTEVKTGFDIQFRDGPGDTFWNFGTFTEAPQDPSIFALPANCGGTCPSSISRDPALLDATYFGSF
Ga0315831_109573	Ga0315831_1095732	F030315	VIKYIEFIIIIKYENILLLKNDIEVLKYKYRIGLDTLLVYTIKYEYIIFY
Ga0315831_110046	Ga0315831_1100461	F023769	LKETLLDWSMPRTDLRKFAFQRSSSRVAHVTRSVNNPTSGLTVKRCHDCSKSDRDTKETIHNGLLLLRVRYGLPYSELPDCSPGDLSRFLSFLLLQGKVRTSVAFPRCQRRGENGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCARHTPSARSQWEKTACSQPPPPPSGYLQHVRRVVTAIFRPGWDRNYHSFVGNHVPNPSSRACKGRADKLWA
Ga0315831_110266	Ga0315831_1102661	F043722	KGHVTWVSQATAFGGDASRPTRSIPKFFWKLSPYYYTWMLAIRLGLPLGAPEAYGGISLPIAPKRSSTDHVRWLSYLSQRPKDELVIGLGLSPLGRSGQSLLDKAASGWVREVLASDVQWASEGLELLSPLALSDDAQLRVSLSEGYRKSVSRIRSVEFYFRAPPGTLEPHAPSVRMSVDRFRRKVSGAVILGSKMKYANTIRDLERKMQIFF
Ga0315831_110327	Ga0315831_1103271	F030315	VIKYNEFMIIIKYKNILLIKNDIEALKYNYRIGLDTLLVYTIKYEY
Ga0315831_110545	Ga0315831_1105451	F025888	KIAVEYVMENITYVPILPIVAEEKGLKTRFPTCSLTAVNLVQQILRRVADHVMIRDPRFSEALGGDLRVDMRGEQGPWDSQDATAATDYHPEWLTRGFYEELADRYSSLAPYRRWFSKLFGPKKILTCDPTLCEPVSLLTHYPKAPLLDDKHAEMFHGVKVKKMGPGLTGLGHAEDILLYWNDWLDDLNGLPGTITTTGQMMGDPTSFPPL
Ga0315831_110602	Ga0315831_1106021	F039430	VLEFNIALNSVSFSGSDGLSLSGDSLTDLVSFSLLLIVVSASLKETFSGSRETDVVGSDVNSLGDDSVSELLVNNDTDGSRVDVENSSGLSVVKVVRHTLVDGTIDDDIDVVTDSIGGQDLRDTDGTVLSETLGEL
Ga0315831_110689	Ga0315831_1106891	F033276	RNLRTLAKQPDKHLTEIPLSLVAVCRKDKKIRAAITSLPDRVLPIKTGVISMDLRPENYSLSRDEEHNAMLKEIERVRERGVMRGSERKTKFKPGVIPAARSFNAVRKQSRKVAPEIIPACYTRCFIEKIKTENVLREVAPLEVSLPPGDGSQINRLIDNIRAFKLTQNSSASPGTIDAEADFVSLCC
Ga0315831_110706	Ga0315831_1107061	F039430	MLELNVSLNSVSFSGTNGLSLGGDSLAGLVSFSLLLIVVSASLEETFSGGRKTDVISSNVNSLGDNSVSELLVNNDTDGSRVDVENSTGLSVVKVVGHTLVNSTINDDIDVITDSVGGQNLGDLDGTVFSEALGEL
Ga0315831_111200	Ga0315831_1112001	F102187	MLYPYDLVIYPTFSFLSYSLTHRRLCHNAWTALGVTSLLHPHTQGIATRVTKTKFRLFPLGLGGWNGRESWGRLRTSCTRTRLFLVGDDDFLHPFPSVTCPPFVCIYGVCEGNISLAFQRRLYTGSFSSFFDITVARQSRAALGVRDAWLRAFLSFPVVYSECNSFVPTFVSRVYDNNRDYGVEKGNGNTCRHACWCTSMARRSG
Ga0315831_111346	Ga0315831_1113461	F022330	LHFVVHNQDEGSTSTSEDVGEGSLEEGLTTFILVDLGEAVKSTVVQDFLSTRLHHQSSSDGIKGIGEETREGGDDLGNEELEEDAGLGVRQEGSLSGIVTTEVAGSVGDDTQDRDSETLVETLNTINSSDFVDTVDETVELSIRS
Ga0315831_112196	Ga0315831_1121961	F028052	DLSLYRQLSKDIMDVDSFVRNASIVEKVVFLDFYGAEMNTSPMVCLDEDLYVVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDEPEEPVSKESPVTPPTGGFPGTDPRCGTERTARWIHDQVATSGDRTVSRFLEENPSRKLTGTPDGKFLAICPTGPHRRSKSADETQRIGLDGSLVPLRQRDVWRDHRIRP
Ga0315831_112619	Ga0315831_1126191	F030309	KVLRSFFKLKEDRIPSDEWAAMDNKTRSAAMAERSIPRWASEAVLRKSSNLQLIIEGKITKETAQQAPRDPKKISALKANGQALEAWQQLKSEFKGTPLLKKPASAKEKAFKKRFDSLVSTYGQQPCFPKLRERPDQQGRSSSRGRSRSSGPGGDFLEMAKAFGEIARAFSGRSN
Ga0315831_113047	Ga0315831_1130471	F023769	ADFLTFLSMSALRKFISSDSSSRMVHVTRPVDNSSRGSTVKRCHACYQSERDTKETIHNGLLLIRLRYGLPYSELPDSSPGELSRFLSFLLLQGKERTSVAFPCRQRRGENGLCSLQRLCRRDRWGLAHSVSSIKRNLPAGCSRHTPSVRSSWEKNVLSQPPPSSPEYLAHVRRVATQVFPSGWDRHYNDF
Ga0315831_113832	Ga0315831_1138321	F012845	VQMPRVLFSRYRKLVCIKEKIARGEQVDQEYQSGAKIDLESQDLKQKLEERLEDSNRMDCYLFYVYGKIYEKIDDDVDRALEWYQKGLDASTDSCLKNHLLCNESWRMRCKKRVLKLRARKGLQVSIVNKNRED
Ga0315831_114297	Ga0315831_1142971	F080697	LLGLLLLTSLDLALFSTSDLLSLGSQFLSGLSVVKLLFDDLESSESVSGFILQQVVSVVVDQDETSRSTTTEMSVETESDDILGVGLELLSNEVSDLFNRNISLTGVEDFQDHLFSGQKSVQQELLGFEYYWAVRHSQKLFL
Ga0315831_114480	Ga0315831_1144801	F080696	LLEGLDLLDEGTTQRIDELAGLGDELGELINVVQLGNEVRKVGSGGFLGDNFNNSLSDGLDLLVLSVTGLSGLSGLLTSESDDENSKNVSVLGLDFTGGINEGLPLSDELTKLVSGHIHSVEVGKTGLTLDIFDAELDLSPGILVVVQVRKSGFNNSTLQRVRSDLCAGSSSDDGLTNDSVS
Ga0315831_114509	Ga0315831_1145091	F089598	LKDPPVAWLLLSITMTRSGTRFRTTCTAASVKPNIGSEAQTCRGCFRSACDTRETISNGLRLIRIRYRLPGSELPDLEPKELSKYLSYLLLQGRRRASVAFPRKQSLSRDSDGLLPLMRMLKHERWEFAHSVSSIKRSLPQGCKQHTPSARPAWEQNAFSTPPPPSSDYLRFVRSEVSKL
Ga0315831_115337	Ga0315831_1153371	F037504	IDITNSSKQPKQSKHPHLLKANMQFSQVFFVAAIIASATAAPTGDLEARTSGGIQCQKHEGKWKYGWEGAAPSEKYTCATGGLINILTCVNILNGNTVNVDLLDILGL
Ga0315831_116070	Ga0315831_1160701	F044246	PDCSSSDLSRFLSFLLLQGKERTSVAFPRRQRRGENGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSTRSHWEATACSQPPPPSPEYLEHVRRVVTGTFRPGWDRNYHSFVGNHVPNPSARACKGRADALWAGRRGEFFTATTSECEAIPRGLTGRYKDILATGKT
Ga0315831_116503	Ga0315831_1165031	F004023	VVTFFGLVLCCTHLSEITLTIAANIMHTFFLFHGKVYWXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNESSYDGLEVEMSXXDEALSNELGSFLELIFILNVLCXXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPYMAXLIVCPHHKT
Ga0315831_116953	Ga0315831_1169531	F030315	VIKYSKFIIIIDYENILLILSDIETLKYNYQTGLDTLLVYTIKYEYLTLCLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031425: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T14 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences