Sample 3300031486

3300031486: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T1 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300031486 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0134331 \| Gp0306413 \| Ga0265783
Sample Name	Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9804606
Sequencing Scaffolds	30
Novel Protein Genes	38
Associated Families	29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Aspergillus creber narnavirus 1	1
Not Available	8
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	6
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	2
All Organisms → Viruses → Riboviria	2
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	6
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Plant Litter Microbial Communities From East Loma Ridge, Irvine, California
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.7417	Long. (^o)	-117.7043	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008406	Metatranscriptome	333	N
F009606	Metagenome / Metatranscriptome	315	Y
F014470	Metatranscriptome	262	Y
F015954	Metagenome / Metatranscriptome	250	Y
F019067	Metagenome / Metatranscriptome	231	Y
F023769	Metagenome / Metatranscriptome	208	Y
F028052	Metatranscriptome	192	N
F030309	Metagenome / Metatranscriptome	185	N
F030953	Metatranscriptome	183	N
F032498	Metagenome / Metatranscriptome	179	Y
F040414	Metagenome / Metatranscriptome	161	Y
F042105	Metatranscriptome	158	N
F042666	Metatranscriptome	157	N
F043722	Metagenome / Metatranscriptome	155	N
F045460	Metatranscriptome	152	N
F049347	Metagenome / Metatranscriptome	146	Y
F050038	Metatranscriptome	145	Y
F052301	Metagenome / Metatranscriptome	142	N
F057456	Metagenome / Metatranscriptome	136	N
F057799	Metagenome / Metatranscriptome	135	N
F068314	Metagenome / Metatranscriptome	124	N
F069521	Metatranscriptome	123	N
F075502	Metatranscriptome	118	N
F094696	Metagenome / Metatranscriptome	105	N
F100157	Metagenome / Metatranscriptome	102	Y
F102187	Metagenome / Metatranscriptome	101	N
F104141	Metagenome / Metatranscriptome	100	Y
F104142	Metatranscriptome	100	N
F104166	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0265783_100066	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	2315	Open in IMG/M
Ga0265783_100266	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Aspergillus creber narnavirus 1	1590	Open in IMG/M
Ga0265783_100496	Not Available	1277	Open in IMG/M
Ga0265783_101053	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	983	Open in IMG/M
Ga0265783_101086	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	973	Open in IMG/M
Ga0265783_101282	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	914	Open in IMG/M
Ga0265783_101626	Not Available	844	Open in IMG/M
Ga0265783_101741	All Organisms → Viruses → Riboviria	822	Open in IMG/M
Ga0265783_101864	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	804	Open in IMG/M
Ga0265783_101899	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	798	Open in IMG/M
Ga0265783_102026	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	775	Open in IMG/M
Ga0265783_102054	Not Available	770	Open in IMG/M
Ga0265783_102078	All Organisms → Viruses → Riboviria	768	Open in IMG/M
Ga0265783_102163	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	758	Open in IMG/M
Ga0265783_102367	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 48	735	Open in IMG/M
Ga0265783_102561	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	714	Open in IMG/M
Ga0265783_102565	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1	714	Open in IMG/M
Ga0265783_102634	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Botrytis cinerea binarnavirus 5	706	Open in IMG/M
Ga0265783_102689	Not Available	701	Open in IMG/M
Ga0265783_102892	Not Available	683	Open in IMG/M
Ga0265783_103490	Not Available	636	Open in IMG/M
Ga0265783_103570	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	631	Open in IMG/M
Ga0265783_103835	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	612	Open in IMG/M
Ga0265783_103896	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	608	Open in IMG/M
Ga0265783_104355	Not Available	584	Open in IMG/M
Ga0265783_104381	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	582	Open in IMG/M
Ga0265783_104717	Not Available	566	Open in IMG/M
Ga0265783_104989	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus	554	Open in IMG/M
Ga0265783_105564	All Organisms → cellular organisms → Eukaryota	532	Open in IMG/M
Ga0265783_106220	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265783_100066	Ga0265783_1000661	F049347	KFKNYSALTSGYAYSRIEECKLYYDRRLERNVVPRDLELYVRGNHNLYLKQIPSCLTLRKAGGPLSKSVEPFLMEDGFLFPSVDNHGEERNTPIEHWFSESSDASQAEELEDEVPGVSDTNSRDIYEDPFRVLAGYCFASQYCEEKPVINVWAGGCHRLQGKIKPDLVGSDRKNVTWFTQINNHDEKMHLLFRHTHWGHRIQCARNSAKGEDPLRNFASTLFRRISFFLRGRHDPLWNNDEIEKFADYKVLRNKTYRAQRLLEVLKTVDGIFLQRFLSFPEEVWDWEKFDLFTLQGISVLLTDEFIDGEVTDFSLKEQVTHYEDLKRSRKLFKQVIHLDEPSKGLLAMNDAPRWVSSFLRPAWSWAVRFEGFSRLYLAGTLSQTRGSGTPPPLVVLRSKRKFLLSVSEPPPEFTATQSALVSAALDDVIGGIPDHVFTGLDTKARVTVTGSACWEATRKEGGTAQAILDLMSKYDEMPIPVRDMDTGKVLEYRHKDDFQSVGTAIFFACLDEVLWTEPEELRKVMLTIVREPSKARVVTKGLAALKIVLDTISKICAWPLKRGFKSSESGMGKSHHGWNLFKDFTSEEMYDLLFSEDRSRREEDTFNDHIDRVIRWQDLWFCSTDYQEATDRLIHAFARLVSRKWMKKCGIPQVLQGIVMGICFQPRTVYFTATGPLKDIGHPSEGDTRKVTLYRGVLMGDPLTKVVLHFSNIISRSLGEGLATGEIFAHFQNGFEANEVFNAKALHT
Ga0265783_100082	Ga0265783_1000821	F050038	LKDPLLTWLLTSITMSRSGTPLCTAAPVKPNIGSGAQTCRGCFRSTADTRETISNGLRLIRIRYRIPCSELPDLRSEELNKFLSYLLLQGKKRPIVKFPRKQSLRRDSDGLLPLMRLLKHERWELAHSIASIKRSLPAGCRQHTPSARPAWEQNAFSIPPSPSSEYLRFVRREVSRIFPLGWDRDYADFVWQHIPNPTARMTAKRADHHFRGRGKEFRGQCMIGRSIPIDQPVRARYKEVMSAGKCRPLVIYDESTEILAPLHKAIESHLMRQEWRLVGPPTEKKISSACVYPCQTSVDLVSATDNLSLEVTEAILGSLLRKSIIIPGPVRLRAFQSLRPLVDCAGEEKEVSHGQMMGSYLSFPLLSLHSYLAALWALRGEEGNVLVNGDDTLVSSHRYLEVSDYPSGYKLNDLKTIRSETVAEINSTAFLKGRGGKWREIRHLRRGGFLADYPGMLHAAKAVAWSVPWTDAFIRSRIGKKWGFLPTQLRLNPKSYVAHERHRSMWNRHFTCLPEAPKELSTSLLPVRRQLDPDERVALFLHIWATGREGGRKRDVFNPTVGFVRRTYQYRAVRPWSRLTYLSKLKALKVPAGRGEEELRFLPADYVSIREDLALKELANFGSLMFSGE
Ga0265783_100266	Ga0265783_1002662	F104142	FVLFNVKSFTTMQNANTVNNNTAKAAKLPPALNPEQPALTQPWRDFVSRGFISRIEVNFTGNATFVGFDLGPLVKTPEGQVREALPAGMAKHFIIESGLWSPKQFGGKKPGDKKDGVQLPKKSLVPKDLKADETSNDALKARASAVAEALTDTVARGRIGSLKFMRKGVDTIEKWWAGAPNQMKTRLLMDGKHHASLTAADHTRFGSVVTECPFRGPVPTPTEEEEEPEEAPRNGKAIASGAPSSPPKPAAK
Ga0265783_100496	Ga0265783_1004961	F068314	QQTRSSGNAVGTSGARPRPALDPLSPALTQPFKDLVGKGIIAELSVKFTPMGVEIKGKASLKLAEVEGSGLNTTDYFPLALLSGVAEKGGLSFNPRDKKKSGGQGPAQVKPAKTLVPADLDGSLNEAALQNRINAIAKACGGGPLVGRVRSEGASQGSETTSYRDWWDAAPAPLRALSLTEGKRRKELTPDHIGKLANLQCPFRGTLEFEVAAGDEEEEVQTSSSKPPATSAGRQSPKK
Ga0265783_100746	Ga0265783_1007461	F030953	DTIISAVRDVTVQDYPSGYRLNDDKTIRAKNVVEVNSTVFLRSGGKWREVRHIRKAGAPTDFQGMIHMAKAVLISPQFVDAWQRARIGRRWGFLPSQLGHTTYPSFARERGLRVRRHWTPLPEASDDVIFPEELVRITGRNPEPVEAEALRVVMWRHGRWGGSKRDVFSPSCGKVRRTYRYRAQPCWSSLSFVGSKRPGSSFSGVKKPDWFLVPASFQSEKEERGLAQLEQFRKNWDNGFIGLPYEALESEG
Ga0265783_101053	Ga0265783_1010531	F069521	EVKSLVVNCMMRFEIAARQIDLSTLSKRDFRILSKKSWFRRALTDGAAPTIKKGVRRSVEMVIGPPPKASLYGVFDVMAKDVAGDMVSRWTGVPVKPEKVSIDYPSYRERSSQTPSYQPPSFRVLQRGPKLWSFVWPRPVYEHFMMYEDRAFVTQGARRSLWIDDHPCLQVSVDLVRTRFVRGSRNFRTYFGPPASLSPCSLPQVNCGYA
Ga0265783_101086	Ga0265783_1010861	F015954	GNVLVNGDDTLVSSNRFLEASDYPSGYLLNDLKTIRSGTVAEINSTGFLRGRGGKWREIRNLRRGGFQTDYAGMQHAAKAVAGSVAWTDAFIRSRIGKKWGFLPSQLRLNPKSYVAFERGRSMWNRNFTCLPEAPNVPSTLLLGVRRRLDPDEQVALFLHQWATGREGGKKRDVFNPSVGSVRRTYAYRAKKPWSRLTFLGKLAALKVEPARREEELRFLPVDYVSIREDIVLKELAAYGSSVFEDD
Ga0265783_101282	Ga0265783_1012821	F015954	DNLSLEVTEAILGTLLRKSRIPGPVRLRAFQSLHPLIDCGGEEKEVLHGQMMGSYLSFPLLSLHSYLAALWALGGREGTILVNGDDTLVSSTVFLEASSYPSGYKLNDLKTIRSETIAEINSTAFLRNSKGKWREIRHLRRGGFLSDYHGMLHGAAAVRGSVEWTNAFVRSRIGKKWGFLPSQLGLHPRSYPAYERERSMSNRFFTCLPGPPTEVSTSLLAVRRELDPDEKIAMYLHQWRYGREGGRKRDVYNPTVGCVRRTYAYRAVKPWSRLSYLGKLRSLKLTARREEEELRYLPADYVSK
Ga0265783_101593	Ga0265783_1015932	F102187	MTLHHGNDAKRGACAAPTITMLYPYDLVIYPTFSFLSYSLTHRRLCHNAWTALGVTSLLHPHTQGIATRVTKTKFRLFPLGLGGWNGRESWGWLRTSCTRTRLFLVGDDDFLHPFPSVTCPPFVCIYGVCEGNISLAFQRRLYTGSFSSFFDITVARQSRAALGVRDAWLRAFLSFPVVYSERKSFVPTFVSRVYDNNRDYGVEKGNGNTCRHACWCTSMAR
Ga0265783_101626	Ga0265783_1016261	F052301	TPRPVVASKGGRKPATVTPTQGLSAEYRGDSRIKDAFVVTVSGPGGTRSFTVHRPIGDTPLGDGEWVFTPVGEVTTLLSRMENPYEKRTEELRAKQRISWAVTKNLAKFDTDGTTLLLPCGKKRAELLKDAHRAAKEAAKSKNTKPGAQDFLLHLSPQEKKEETALSDYLKSENVVRAAERAVPLPQYETCGGPLADHKQVGVKYLQNVGNSHQAVDKLIYHLAAGGDSVTSAEATAGSPAAKRQASPPKESPTK
Ga0265783_101741	Ga0265783_1017411	F043722	FGGDPSRPTRRIPKFFWKLSPYYYTWMLAQRLGLPLGAPEAYGGIGLTISPKRASLRHVQWLSYLSQRPKEELIIGLGLAPLGASGQSLLDKSAADWVKKVLSADSQWRAEGLELLSNCALTDSAERRISLKEGYRQSVSRVRSVEFYFRAPPGSLDPSAPSVRMASQRFGRKVGSTFVLGSNMKYESTIRDVERKIQIFFSTSGGFLPDPWAKPSSVYGLERSTEVKVRWKAPWIQGLG
Ga0265783_101864	Ga0265783_1018641	F042666	PKADLRHASQRRSSSRLTRVKRPVDNSTSGSTVKRCFECSQSARFTKETIHNGMQLLRVRYGLPYAELPDCTSMELSRFLSFLLLQGKERTSVAFPRQQKKIKKNTTNCEEKIGLCSLQRLCRRDRWALAHGCSSIKRNLPKSCRRHTPSARKAWEANACSQPPPPSSGYLQHVRRVVTDSFCPGWDRNYNSFVGNHVPNPSSRACKGRADALWAGRRSEFITATTSEMEVTPPALTGRYKDILSAGKTRPMLIFDESVELLAPLHK
Ga0265783_101899	Ga0265783_1018991	F032498	KWREIRHLRRGGFLSDYHGMLHCAAAVRGSVDWTNAFIRSRIGKKWGFLPTQLGLHPRSYPAYERERSMSNRLFTCLPVPPTEVSTSLLAVRRELDPDERIAMYLHQWKYGREGGRKRDVFNPTVGCVRRTYAYRAVKPWSRLSYLGKLRSLKLTARREEEELRYLPADYVSKREDEILSELERFGSQCFSDL
Ga0265783_102025	Ga0265783_1020251	F008406	PEFGSLNSTLCRRYGAFYRVVATVRMGMLRESESFDTLSKGFDDFIAGIKGSLRYRAAMAWFSWNIGKIRPLGLTTWDLGFRGPLAYRATKKFGLRQGPSLQKIPSLKVENGLSLTCEYVDPDLLDQDEKKENLAELAAWKWRTAFQVSSRSRALMDLYLAVSSTRRDAPNFKPYLYGGEQSVISKNVGGAKIFRQRVRTIDRGFPLLIPMRGKLPTYEEFLAGEVDVGSAELLAKKK
Ga0265783_102026	Ga0265783_1020261	F042666	CSQSARFTKETIHNGMQLLRVRYGLPYSELPDCTSVELSRFLSFLLLQGKERTSVAFPRQQKKINKKTINREDKDGLCSLQRLCRKDRWALAHGCSSIKRNLPKSCKRHTPSARKAWEASACSQPPPPSFGYLQHVRRVVTDSFRPGWDRNYHSFVGNHVPNPSSRACKGRADALWAGRRSEFITATTSELEVTPPELTGRYKDILSAGKTRPMLIFDESVELLAPLHKLLYSHLAKQDWLLCGPPTEERMASVLVND
Ga0265783_102054	Ga0265783_1020541	F009606	NPVTGANFEFVNEPRIGDSIVVVLAGPSGVQSFTFHHPIGVTDVGGEDWVCTPTADIPSLLARRDDPDEADRKAKRDRYRLHLAVVAGLLKKDDDDDQLVYPDTEINRQDALAAARAAAKDAVKAEKGKTPPDLYIRFLPQAVQEKEVAIRDKLAAKATIQAAETKFPSSGYRTRGGPLADRDQSSVEYLEGCSRSQASDAITKRIFG
Ga0265783_102078	Ga0265783_1020781	F043722	QASAFGGDATRPTRSIPKFFWKLSPYYYTWMLAIRLGLPLGAPEAYGGIGLPIAPKRSSTDHVRWLSFLSQRPKDELVIGLGLSPLGRSGQSLLDRAASGWVREVLASDVQWASEGLELLSPLALSDDAQLRLSLSEGYRKSVSRIRSVEFYFRAPPGTLEPHAPSVRMSVDRFRRKVSGAVILGSKMKYADTIRDLERKMQIFFTTSGGFLPDPWAKPSSVYGLERSTEVKVRWKAPWLLGVG
Ga0265783_102163	Ga0265783_1021631	F014470	VRRTWTALPEPTDVVVFPEELDRITGRDPTPVEAEALRVVMWKHGRWGGSKRDVFSPSCGKVRRSYHYRAQPCRSHLSFVGTGRPKLSSLGEKEAGLSLVPANFMSEEEMRGLADLEQFRRNWDRGFILSED
Ga0265783_102191	Ga0265783_1021911	F094696	MSSSVLNLSEAPVAEGRPKLVRVIKNKDGKEVNMDLWNDVMKFDAAKLEAVMKLASVDPDYELTSFIRAIEYQGFDRLFYIKLALSKMSVSMFCRFAILGAVRGSKFDRICETCEGMPQDLKIGFTELKFVKTPKKKDDLTILRCTASIPHWCAFYLREASIDKKLNLDCPAPLQFPGAASLPMSKTVRMQHIAFCQHFSSLLPGGKF
Ga0265783_102367	Ga0265783_1023671	F032498	FIRSRIGKKWGFLPTQLRLNPKSYVAHERHRSMWNRSFTCLPSPPKGDSTLLQAVRRQLDPDEQVALYLHQWATGREGGGKRDVFNPSVGFVRRTYAYLAVKPWSRLSYLGKLRALKVPVRRREEELRFLPADYVSIKEDLALRELAAYGSQLFSDE
Ga0265783_102561	Ga0265783_1025611	F100157	KDECSGISELDCVPRWIQSFYRRTWSRSVCHTGYQRLYLAGTLSQTRGSGTPPPLVVLRSKRKFLLSVSELPPVVSTTDRNLLSAAMDDVIRDVPDHVFTGLSTKARVTVTGSACWEETRKDGGTAQAILNLMKKYDELSIPVRDLESGNVVEWTPRESFESIGTAIFHACLDEVLNTSPETLREVALTIVREPGKARVVTKGHAALKIVLDTVSKICSWPLKKGFKSSESGMGKAH
Ga0265783_102565	Ga0265783_1025652	F104166	MLLNPERAPALISKWQKLLGKDLESIQVEYKADGVAVQLFGMPGTAFEKKDGDGETVSITIPEYRDIKATESAPSFEDAKFAFRNQFEVRLNQEFPQGVDLGDGSEAALRSAVQALPFHQRRVMLMSNKQFRTAYPNGFAGGANPPA
Ga0265783_102634	Ga0265783_1026341	F019067	WQLGMAYPTFSTWNPLDFLEDDFQDDFLDLSEIRQIGMKTAVIASDNGQELRGGNKVIGREVGDDRVDMSRSPDSLCCALAVQEMVTKMVTSPEDTFIGMRSWNFCEVTSGPLTDPSEGFDHVRKDGDFTRLGFNDSIVLRIILDVQKGDGDEHSSSEPGKMSMLGSRLATPRRENRGAWMLASMFQDAMLCTHKASEPKYLPQVMGGTGVTALFDNADNIFLHMLAYKGGAYRR
Ga0265783_102689	Ga0265783_1026891	F042105	GQAPIGLAIGTWPRLDGAPDPVQPDSKSYDSRRRKWAHFIGMDFLFTQREYCQTIQSDSQGCKVLVNSTKHGDLLSVRTVPQHLLDKAWFKRKLRFPREYLGIPKMEERVSKLSYLVHVLTQRGIPTRAVLKSLKRLCLTWMYTKYEDMRKHVSSITRKLMVSGGTIRNPWVSRKDLPRNPCFHGEKIHANGLIAPLWSRSPPVRRDLAH
Ga0265783_102892	Ga0265783_1028921	F028052	RQISKGRMDVDSFIHSASVVEKVVFLDFYGAEMNTSPMVCLDEDLYIVYHDTQAYVYTPRMFQEYMRRCRAAEVCALYPDSDVAEEPALKESPVTPPTGGFPGTDPRDGTDRTARWIHDQVTTSGNRTVSRFLEENPTKDLTCAPDDKKLAIRPTGDHRRSKSDGETQRIGLDDSLIPLRQRDVQRNHRIRPPNSSDIPPR
Ga0265783_102987	Ga0265783_1029871	F075502	WQLSTMSTPNEIKNRNIEAMAEVPLLAIPLLRGLDEHLDPEGTLRKLLQKIATGEPCPSGLLSNTTEMLQVFKRSLKVSARVAPGSSTGKAKRVSFGEERSYKVPLYETFVPGGVPLRSKAPTGQLLPYSESEQEFSDTEISQFLRNLAVSALSSGLSPEHLTGGK
Ga0265783_103438	Ga0265783_1034382	F014470	VRITGRDPTPVEAEALRVVMWTHGRWGGSKRDVFSPSCGKVRRSYRYRAQPCWSSLSFVGSGRPKLSPLCEKGGEMSLVPASFISDEESRGIADLEQFRRNWDRGFIISDLEALDRDR
Ga0265783_103490	Ga0265783_1034901	F057456	PVIPSVAFPIIQDLSFLHLVILCPAYATVRFVVNQTVRHALAVELFKY
Ga0265783_103570	Ga0265783_1035701	F057799	NHFRSPPPSLPRGYITFARRVVRSLFPHGWDSGSYESCVLNCDPSLSACLENRRGAGGLHGFVSGSYEGPGKFRQQDFLTTCLDGATRPLSVSSGLTVVQSAGKPRPLSKFSADAIHLRPLHAAIYDRLSREKWLCRGDFTTDVLQRAGFSYVSGETLTSGDYKSATDNLSIEVAEAILDELLRSTVSVPGSMKAYAMGILRPHLFNLEH
Ga0265783_103835	Ga0265783_1038351	F045460	KGLPPSCECMTAPLMAKLVEGFARPKRDLPAGYLRFVQQQTLRLFPKGWDLGYEEQVLLTSPPLSSTIENSRANGGCLGSGIDHDAFLNEALSGPFRPERERPEAELILVQSAGKPRPLTKFSADELLLRPLHKTIYNHLSRSRWLARGDVTDEMLLKAGFTDSGHLTSGDYASATDNLSIEVAEVIVGALISTSSVVPPSVCQ
Ga0265783_103896	Ga0265783_1038961	F023769	MSALRKFISSDSSSRMVHVTRPVDNSSRGSTVKRCHTCSQSERDTKETIHNGLLLIRLRYGLPYSELPDSSPGELSRFLSFLLLQGKERTSVAFPRRQRRGENGLCSLQRLCRRDRWGLAHSVSSIKRNLPAGCSRHTPSVRSSWEKNVLSQPPPSSPEYLAHVRRVATQVFPSGWDRHYNDFVGRHVPNP
Ga0265783_104355	Ga0265783_1043551	F030309	EEPKGAPVSQSNPLRVKGEAKSKALSDGQRDTLRKYFHLEASPVPSDVWSSLSNKERAAEMAKRSIPRWASEAVLRSAGNLQLIVEGKLTKENANSAARTPKIAVTKATGQAMEAWQQLKSDFKGTPLYRNPSTAKEKAFKKRFDQLVVSYGQQPCFPKLRERPDQQGRSPSRGRKPSSAGGDFLQMAKAFGEI
Ga0265783_104381	Ga0265783_1043811	F023769	LTCLSMSALRKLTSNHSSSRVAPVTRSVDNSSRGSTVKRCHACLRAERDTKETIHNGLLLIRVRYGLPYSELPDSNPGELSRFLSFLLLQGKERTSVAFPRRQRRGENSLCSLQRLCRRDRWGLAHSVSSIKRNLPAGCHLHTPSVRSQWEENVLSQPPPSSPEYLAHVRRVATRVFPAGWDRNYND
Ga0265783_104717	Ga0265783_1047171	F030309	AKSKALSEAERKTLRTFFKLKEDRVPAEQWAAMDNKSRSKAMAERSIPRWASEAVLRKSSNLQLIIEGKITKETAQQAPRDPTKISATKANGQAMEAWQQLKSEFKGTSLLKKPSTGKEKAFKKRFDSLVATYGQQPCFPKLKERPDQQGRSSSRGRSRSSGAGNDLLEMAKAFGEIARAFSGKSN
Ga0265783_104989	Ga0265783_1049891	F069521	LYGVFDTMAKDVAGDMVSRWTGVPVKPERVSIDYASFRERSSQTPSYQPPSFRVLQRGPKLWSFVWPRPVYEHFMMYEDRAFVTNKARRSLWIDDHPCLQVSVDLVRTRFVRGSCNFRTYFGPPALLSPCSLPQVNCGYA
Ga0265783_105181	Ga0265783_1051811	F019067	PTRVLDPTEINSMGREVKCVAVRQHVHIKPGFFKRRILGREVGDDRCDICGLPIGLCAMLMAQERITHMVTSQEDTGIRLKSFNFCEVTSGPPTDPSQTFDYVRKTGDFSELAFNDSLIARIILDVQKGDGEDHSSTPAGKMSMLGSRLATPRKENRPFWMIASLFQDAHLATHLAREPKYL
Ga0265783_105564	Ga0265783_1055641	F104141	FFFTEVNSTDGSTHTEDLLKLESDGGLDFLNLIFDLFVFTDSDGEFTDLVQGVTHELGDLLHEGFGSNQDIERLGPLLDELFILVELLGTFSIDATNIDLLGLVTVDGSTDETDLSVGGGDVGKSDGTVETLILLGVVVSETNLEFYGFSELSLLSVGQHVGNGLLKDLGGDLTHLV
Ga0265783_106220	Ga0265783_1062201	F040414	LAKSSLSPVFRAEDGTLKRVRQGQMMGSYLSFPLLCLQSYCAASWAARFDSGARYIVNGDDCVISASRYVTVQDYPPGYRLNDDKTIRAMNVAEVNSTAYLRQGGKWREVRHLRRGGAPTDYCGMMHMAKAVTSAQCWVDAYSRCRIGRRWGFLPSQLGHYGYPAHLRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031486: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P1 T1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences