NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031560

3300031560: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_60m (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031560 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114292 | Gp0306348 | Ga0265605
Sample NameMetatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_60m (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size103795653
Sequencing Scaffolds12
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1
Not Available8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila1
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → lake → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCanada: Sakinaw lake, British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)N/ADepth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F006508Metagenome / Metatranscriptome371Y
F014684Metagenome / Metatranscriptome261Y
F024682Metagenome / Metatranscriptome205Y
F025653Metagenome / Metatranscriptome200Y
F035608Metagenome / Metatranscriptome171Y
F046170Metagenome / Metatranscriptome151Y
F071959Metagenome / Metatranscriptome121Y
F076133Metagenome / Metatranscriptome118Y
F079305Metagenome / Metatranscriptome116Y
F086602Metagenome / Metatranscriptome110Y
F088317Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0265605_1003598All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon2514Open in IMG/M
Ga0265605_1016423Not Available1147Open in IMG/M
Ga0265605_1019601Not Available1033Open in IMG/M
Ga0265605_1025741Not Available879Open in IMG/M
Ga0265605_1029644Not Available807Open in IMG/M
Ga0265605_1029926Not Available802Open in IMG/M
Ga0265605_1033210All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium753Open in IMG/M
Ga0265605_1046594Not Available615Open in IMG/M
Ga0265605_1047370All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila609Open in IMG/M
Ga0265605_1048269Not Available602Open in IMG/M
Ga0265605_1056437Not Available549Open in IMG/M
Ga0265605_1065443All Organisms → cellular organisms → Archaea505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0265605_1003598Ga0265605_10035982F014684MIGYALSGAGAGLVLDELIHGPFTLTPTNHEFWGIVIFIAGAVCISKKPHGKD
Ga0265605_1016423Ga0265605_10164231F079305RFMMMVAAGAALATAAGFQVQGNMSEAWDKGSLRVRTGPEMAKLWFGLPAHSGITVVAKPDTGAAVTATLNMSATVDLRVPAEYAVTITRDSGDGQWTCRDAAGSPVLLGFGSSVDETRHARLTYVADEDEETWKFTWPREATFLVELFGKAGKVVEEQDLSDSDEFELVGGGSFTLEVVPTEGSGEFSAKKSE
Ga0265605_1019601Ga0265605_10196012F046170MIRIQDFGEVAYGGAVTLTSWWDNRRIEEGKIGTKDILKKASFYTYLGVGLIATLMSVFGWMRRYEVWTEKVSTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTFAW
Ga0265605_1025741Ga0265605_10257412F035608VAIEDTNRIIRDYLLTCGTLTPLLATVTSIYCPRLPENAALPAVSFFTRGGGSTPYIPGIPEPSVQFDCWANNPIDAREVYRALYDNLQGIQGKVVTVGPPTEIIWSAIEEVQGQDLVDVEIPNYFRTLAFFRFMIKAE
Ga0265605_1029644Ga0265605_10296442F000344MRPIHPHAAESGVGKHTARNCESAQACAAGKERVANAH
Ga0265605_1029926Ga0265605_10299261F086602QIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIARDEPLHPLTK
Ga0265605_1033210Ga0265605_10332101F088317MAGPEDNVKYPERPKLTSADVNKAAPKTRRDHYKGVQAPPVPKLEKSQLMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGEAGYKAVDDAYASFADGEFRTAQARGMLKSAPKCSLQEIAAFICTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPKYCPYDVRQGDYRLCAATAGYERELVKMCNPRYRAYLSRTKAIGDDCCELTIDVD
Ga0265605_1046594Ga0265605_10465941F006508VALANAPSKAVADQSQVVKTRRRNRRRVLTWFASRWRNHQPKRAEKPHSK
Ga0265605_1047370Ga0265605_10473701F076133GKARLETASSRVRPTGSFDPCADAVTPEGFGCYCADQNAVTVPGGPTPPKGLARSTSEARKEIGTAGRERTWQSP
Ga0265605_1047370Ga0265605_10473702F000344MRPKHPHAAESGVGKYTARESERVQACATGKERVTN
Ga0265605_1048269Ga0265605_10482691F071959VMSNDMTFTDKKEYRTKALAAGLERCGTKSIGDINSDVPGLQAIPIANKSARVAAIKAYIETGAWPKTIDQRELAPLTDFVAAAAQDFWQTIALAAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVGGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELFAIQVLCQVIAGVTPVHIDNFLFE
Ga0265605_1056437Ga0265605_10564371F024682EDELISKLKQEIGKTLPPMFSGMAENMLESNRDVIINWLKENKDLVKEVIES
Ga0265605_1065443Ga0265605_10654432F025653IGMSDPIKYFETKLKAMSLGELQAYKKRLDERIQKMIMDTAPNEKIAPLILYQGILEHEIKKRTTS
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