Sample 3300031615

Basic Information
IMG/M Taxon OID	3300031615 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0324297 \| Ga0310107
Sample Name	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	57139012
Sequencing Scaffolds	40
Novel Protein Genes	41
Associated Families	40

Dataset Contents

Total Genome Size

57139012

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	37
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Norway: Oslo
Coordinates	Lat. (^o)	59.9982	Long. (^o)	10.7894	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Norway: Oslo

Coordinates

Lat. (^o)

59.9982

Long. (^o)

10.7894

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003050	Metagenome / Metatranscriptome	510	Y
F003427	Metagenome / Metatranscriptome	487	Y
F006257	Metagenome / Metatranscriptome	377	Y
F007032	Metagenome / Metatranscriptome	359	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007328	Metagenome / Metatranscriptome	353	Y
F009335	Metagenome / Metatranscriptome	319	Y
F009472	Metagenome / Metatranscriptome	317	Y
F009688	Metagenome / Metatranscriptome	314	Y
F010621	Metagenome / Metatranscriptome	301	Y
F011845	Metagenome / Metatranscriptome	286	Y
F012024	Metagenome / Metatranscriptome	284	Y
F012750	Metagenome / Metatranscriptome	277	Y
F017082	Metagenome / Metatranscriptome	242	Y
F020652	Metagenome / Metatranscriptome	222	Y
F021676	Metagenome / Metatranscriptome	218	Y
F023505	Metagenome / Metatranscriptome	209	Y
F024793	Metagenome / Metatranscriptome	204	Y
F027759	Metagenome / Metatranscriptome	193	Y
F029356	Metagenome / Metatranscriptome	188	Y
F030305	Metagenome / Metatranscriptome	185	N
F036126	Metagenome / Metatranscriptome	170	Y
F039646	Metagenome / Metatranscriptome	163	N
F044897	Metagenome / Metatranscriptome	153	Y
F050832	Metagenome / Metatranscriptome	144	Y
F055499	Metagenome / Metatranscriptome	138	Y
F058585	Metagenome / Metatranscriptome	134	N
F059538	Metagenome / Metatranscriptome	133	N
F059694	Metagenome / Metatranscriptome	133	Y
F060406	Metagenome / Metatranscriptome	133	N
F063428	Metagenome / Metatranscriptome	129	Y
F065397	Metagenome / Metatranscriptome	127	Y
F070665	Metagenome / Metatranscriptome	123	Y
F079408	Metagenome / Metatranscriptome	115	N
F079435	Metagenome / Metatranscriptome	115	N
F081979	Metagenome / Metatranscriptome	113	Y
F084948	Metagenome / Metatranscriptome	111	Y
F086415	Metagenome / Metatranscriptome	110	N
F094670	Metagenome / Metatranscriptome	105	N
F104573	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0310107_105462	Not Available	1674	Open in IMG/M
Ga0310107_116810	Not Available	902	Open in IMG/M
Ga0310107_117392	Not Available	883	Open in IMG/M
Ga0310107_118320	Not Available	852	Open in IMG/M
Ga0310107_118492	Not Available	847	Open in IMG/M
Ga0310107_118771	Not Available	840	Open in IMG/M
Ga0310107_119078	Not Available	830	Open in IMG/M
Ga0310107_120560	Not Available	790	Open in IMG/M
Ga0310107_120800	Not Available	784	Open in IMG/M
Ga0310107_121030	Not Available	778	Open in IMG/M
Ga0310107_121390	Not Available	768	Open in IMG/M
Ga0310107_121551	Not Available	764	Open in IMG/M
Ga0310107_122287	Not Available	746	Open in IMG/M
Ga0310107_124118	Not Available	706	Open in IMG/M
Ga0310107_124163	Not Available	705	Open in IMG/M
Ga0310107_125214	Not Available	685	Open in IMG/M
Ga0310107_126517	Not Available	661	Open in IMG/M
Ga0310107_126588	Not Available	660	Open in IMG/M
Ga0310107_127518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
Ga0310107_127682	Not Available	642	Open in IMG/M
Ga0310107_127935	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	638	Open in IMG/M
Ga0310107_128012	Not Available	637	Open in IMG/M
Ga0310107_131220	Not Available	589	Open in IMG/M
Ga0310107_131613	Not Available	584	Open in IMG/M
Ga0310107_131705	Not Available	583	Open in IMG/M
Ga0310107_131864	Not Available	581	Open in IMG/M
Ga0310107_132028	Not Available	579	Open in IMG/M
Ga0310107_132139	Not Available	578	Open in IMG/M
Ga0310107_132444	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	574	Open in IMG/M
Ga0310107_133277	Not Available	565	Open in IMG/M
Ga0310107_134507	Not Available	552	Open in IMG/M
Ga0310107_134874	Not Available	547	Open in IMG/M
Ga0310107_135410	Not Available	541	Open in IMG/M
Ga0310107_136306	Not Available	532	Open in IMG/M
Ga0310107_137004	Not Available	525	Open in IMG/M
Ga0310107_137088	Not Available	524	Open in IMG/M
Ga0310107_137781	Not Available	517	Open in IMG/M
Ga0310107_139187	Not Available	504	Open in IMG/M
Ga0310107_139416	Not Available	502	Open in IMG/M
Ga0310107_139697	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310107_105462	Ga0310107_1054621	F086415	MPSIEQEPLPRNALSSARLRTSPASRLGHRDSGSRRLFTPQEPLRTPEGPGPRPRAPLPTGDTLLWTSASLADFCNLKQRAGTPNERSILTREWSFRSATRRHQPMPVALACDTLPHRGPASLDLHAPACARRVPLAWTGQMEGRSVRGKASRALLDDVARALLVAPRAPGSPVRLAMRSGGPRHSSPRPRFPFDASPRRATPSKEPGCLLPRRNPYASGGWLLRARLDRGLVTPPPERHCSETRAPLLPALQRLLLTRKALEPARPTVSRGAEASLERPVAAPVTASTTESARGQMC
Ga0310107_109028	Ga0310107_1090281	F044897	CYLSFLTTSHIIMFSKVALSTLAVGVISANALAIPVARAPQPESWSEWGTNIGNYYANKYGSPSDVPGLPQFKRSPEPESWEEWGTNIGNYYSNKYSSPSSVPGLPQFKREPSPEPETWEEWGTNIGNYYSNKYSSPSSVPGLPQFKRSPEPETWEQWGTNIGNYYSNKYGTPDQVSGLPRPWLNSKREPEPQETWEQWGEAIGNYYASPWEKSKREPETWAEWGKAIGDYYSAPWKNHRREPGVLDTFLSWGKKNGSTIPQSKREPSPEPETWEEWGTNIGNYYSNKYSSPSSVPGLPQFKREPSPEPETWEEWGTNIGNYYSNKYSSPSSVPGLPQFKRSPETWEEWGTNVGNYYSNKYSSPSSVPGLPQFKREPSPEPETWEEWGTNIGNYYANEYSDPSSVPGLPQF
Ga0310107_116810	Ga0310107_1168102	F009472	GLVLLVLIGLGVAWLWTRGRQKLKLPVSGKHWGWIIVIVVVVLVIAYGASGHVSQH
Ga0310107_117392	Ga0310107_1173921	F007311	LWIFNSLFDFILLIMKTFSYFCWPPHFAVAPVMDCSMLDAWHSLLHADCSALHFVCPVQTTDLTRCSTLSALRLLRIAPRSTPCARAGHGSLRATDCSVVQHLELCPACGLLRHRDLAFHAALGLLLVRRFPLSVAHGLLRARRLTLHAGLRIAPYADILRPRAVYGLLHFRH
Ga0310107_118320	Ga0310107_1183201	F030305	PLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQF
Ga0310107_118492	Ga0310107_1184921	F017082	NYRKKCQLGSDGQLSFDVTGCLSSGAEHKVDETWEDGNNFYACRTDGAVLKVVNLGCVDGGKRVNVKDTIAKDDALYSCDETVNGGSKLVQAGCVKDGKQYKAGDAFEVGKFWFNCTRTGREKVQAKAAGCVNNGKRLNDGDRYFDNDVIYECRIDADKNDVITTGCVQKDDSGSVVERRLGCTWVEGTEPIQYEWTCKGDSATNTAKKVQVRCNYKVGGGVYNIDPGCYRVVDKSAYGCVQQGDKLNLQSFTGDGAEQSASGAGLHAC
Ga0310107_118771	Ga0310107_1187711	F021676	MRPTTPLAVENGVGKLTAPEKGAPNVSTGKRDWRTPIPHLSL
Ga0310107_119078	Ga0310107_1190781	F060406	PGVSMLGELSSTTDCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGFLMHP
Ga0310107_120560	Ga0310107_1205601	F050832	MVMDVAATDRTNLAKKKKDGPSRAMLRSILLLVLHV
Ga0310107_120800	Ga0310107_1208001	F003427	MVKTWIRNHKRVFTWFARRRPQTPAEASSEASLKIQRPQGAGRPCYEAEKTPLAVENGVGKLAAKARLMSAWERE
Ga0310107_121030	Ga0310107_1210301	F036126	VNSASPKLALRLMRSRVNQPDPTFPQSPGIIHETLSFNLTLHCRSV
Ga0310107_121390	Ga0310107_1213901	F058585	YSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASTPCTPARPVANLPARIGFVSFGSTGCKPPTCVECSALPLVLRRSIWLAPDDPGFIGLAPDNPGSTWLAPDDPGFIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLTRLAASSGLRLVLPLPLGWLRFQFAPAASPSVLTGREPLGLRLAAPSPAEPLMHSLFQLNLASPAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQV
Ga0310107_121551	Ga0310107_1215511	F039646	QEYWVSESGIVTQKNVDTGEPYSHPSVEGLFHQFTARTKHGGVAWTVTKMGGDTYQFEFVSCEPEMCKEYVPLRFLKPETRVEWAFNDTVVRGFLGWTWMTLTQGDRKYQLVDCDLTDKLRRYIAGKPRNARMKSELMNYARRLTNKADIIAIHGGGAHEVLVGRMSDYVENAFYCDVRHELEVAMSYWRRNHVVTEALTTYYETGKMPLDVAKIQKAIKVGVKTLTSAAHIPALALGAGALATGGIGPAVLAS
Ga0310107_122287	Ga0310107_1222871	F063428	GKVGLGWLARLLLNQPKGGTAEAKFTGSSGAFARAKCE
Ga0310107_124118	Ga0310107_1241182	F010621	LTWLAGRWRNHQPKRAEKPHSKSVGREALDGPATRPVTPLAVENGVGKPA
Ga0310107_124163	Ga0310107_1241631	F029356	MTTLILNPRGKDGGRPPARVAGRGEATTRRLDRLPGESPGTDVRKISAEA
Ga0310107_125214	Ga0310107_1252141	F009688	DGSAPSSLSRTGIGRPSGAAGFPTLFSTANGVFDLVAGPSNTFRPWILSEAFELAWADGCATGLPTRSRHACNLVRVLTTCPGTATDFDGAFSRSHGSRLFTLRLPYFCSPAVSFLISPAPGSLSRSLPSRRELPDLCAPFVRLSTFLFLAGSTF
Ga0310107_126517	Ga0310107_1265171	F081979	ATHHTEFLSLASLSTPRLSAVVIYHTPQNTIIMTATDSPTVSSTPSPSQPPAQGQSWAEWGQSLGNFYSQKYSNPESAGMTHTNQSWAEWGQGFGKFYAQKYSSPDNVEDLPGTGKARLPDAPPQTWAEWGKDVGESYSTQYGTPNTMPQFGQQKAQTWGDWGKSVGEYYSAPWAKRS
Ga0310107_126588	Ga0310107_1265882	F104573	MGGIFHKKLNIVWKPIEKKNSDGKVKRTLKKGLKVLEIVKRERNKII
Ga0310107_127518	Ga0310107_1275181	F070665	VPESQLHSDVDAAAGAVEEEAADVIDETSDFADEPIGE
Ga0310107_127682	Ga0310107_1276821	F084948	TSLPLLFSLDPTMVFDLSREILNVRFGRVPSKDRDEKSKRSRDIVPAVDVENAPLVFRKSSKRLRGYSFLELDDSTSYDDEDSAPKYDSHDQPIPPSLQLKRFSSSQRYSSRQNQLVQDLSVKLIAVVLPKQCPLPPRPEPRAIFNEDIRVRKLRGDKYDTSYCLPKTQVAPRPPSPLRKELARAL
Ga0310107_127935	Ga0310107_1279351	F065397	MAILKTTATTDMRWMEIAPPRRVCMGRRRPVEKTLWPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEC
Ga0310107_128012	Ga0310107_1280121	F059538	LVNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAAYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSHLPVLTGFCCNN
Ga0310107_131220	Ga0310107_1312201	F094670	LHQYNPRISRMVNINATTPQLKAAKSVVEAYGSRDLKGSGSIFAKNFKFQSFPQTADHREETKGQHFQNYGGVLSSYAKMDTIIHDVIEGPGKVVIHMTAVWSTVDGTATNYDTVLIFSFIEEDGELKVVDIKDFADPEKRDAFHTEASKASAKGVLVA
Ga0310107_131613	Ga0310107_1316131	F007032	MVLAYYFALWLPGSHARSAFRLHRRNRLAPTPAASLPQTRCAFAGQLIRLLSPSPLPSGSFRSLGIKAFNGRRRRPVRLPNPPDLRSLPDARSIASLSFGSSSAIRYVSGDLLF
Ga0310107_131705	Ga0310107_1317051	F003050	MESVKAGAVAGEGKAVTSGRFSFGMISCGAPESVEAVTAKPVAGEQTGKAHGDPDRDAQYGCMPVVSKAGNRVTWN
Ga0310107_131864	Ga0310107_1318641	F011845	PGFTVRFSDPSACGRSLCGQMLRIDRLLLAVTAFRRVTGQCHKRFNTARPHRTQHPAGTGISIWSFARSQRRFRHHCEVNVPDLYLRFHVEYPRESVRSLTPSLRSVSRPNRGEINARNPFFAPISNAPDLSPVSTPLEVFLRKPSGSKRSTGSFSGSPSHPTFDCPLLPAASSCDSTTDNPKPASSGLTHRS
Ga0310107_132028	Ga0310107_1320281	F079408	MPVRPFGSAAGIGLPQSPPLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPIPPDFRLLPVTVLFLEEGCGSSFAVRYVFGGLL
Ga0310107_132139	Ga0310107_1321391	F050832	MVMDVVAADRTSLMKKKKDGPSKAMLRSILLSILHV
Ga0310107_132444	Ga0310107_1324441	F006257	RFPALLTTGMHGTEHCVQERWMSRRSAPPRPISLPQDHCFPAQRSFSPLRSQPLVTAFPSPATAAPSQRPPFRGQRSRPATSRPASSFPRPVRLSAPLPSPVRPVASSFFASGPLRLFSLARLAASPVSTPLRDFCIPRDQSVQQVPPPLGSPSESARLPLAPRNRFYF
Ga0310107_133277	Ga0310107_1332771	F012750	MEASEREQPLRARERPLRGTGSIGKRDCSVPGGIDPEAEKSALGERNGETLSATQCDALCRACRWRARLGI
Ga0310107_134507	Ga0310107_1345071	F059694	VTESAQAEVIAGEGKAVTSERFRFGEKAKAAARLEAVKRKPDKPATGKLTGEAHGAPKRDAQYRAC
Ga0310107_134874	Ga0310107_1348741	F055499	ITRSTVGAASSGYPSGRPPAFAGAATSGCAGFQNSNLRRRPALQLDRWPTFRLGSVSCPSAQPAENFRLASAVLHIRSTFGEPSSLRPIIPGPSSLRRMALPLARPTTYFRLTSDAVLWLGWRLHLACALCCPCPSAGSASSLHRVRHPPSLPAVNLSACASWFLHRLSL
Ga0310107_135410	Ga0310107_1354101	F009335	MVKTRIRSHKRVFTWFASRRPQTPAEASLEASLKIQRPQGAGRPCYEADNSACRGEWRREAGS
Ga0310107_136306	Ga0310107_1363061	F012024	MHGTEHRVSERRALRLLAPRQPVYPASASTLPDAPQPLILSKTGPFARNGLSLTRVTSAYADPIPGSKVLACHFAHSLAGLPTRSALRLRRQSLVCPSFRLHPRLKPVVFFTGLLCRLCRLLPLPFRSFRSLRIKASTGFATVRSTFRNRPIFVRSPQPFHLKI
Ga0310107_137004	Ga0310107_1370041	F079435	PGFTVRLSEPPACSVFVPQQKASDSGFATRRHRFSACAGSKQRTLSQDTLPAGAGNPERSFARPQRRFRHHCEVYAPDLPLRFHTGRFHKPVRFQTPCPKPVVCSVFRHSRNARQHPLPFGPLEPSGSKRSAVAATRSSPLLNARLSFAPRRMLFR
Ga0310107_137088	Ga0310107_1370881	F023505	DDRKEVGEVPRIIPGDRGKVESGWLAQPLEDRFARGGNRRQYSPVPLAAFARSQ
Ga0310107_137781	Ga0310107_1377811	F027759	NETPAENKIEAERFTDNPGRPGKSQVRLVDLAPQNRGASCGEAKFTSSSGGVRTPSNANEELGSEKR
Ga0310107_139187	Ga0310107_1391872	F024793	VNSASPELTFRFQRSRINQPDPAFPRSPGIIEKLDNFNFTRRYPL
Ga0310107_139416	Ga0310107_1394161	F007328	APTTAPRGHGVAAHKAPVVRRIMNDVADGLLLDVREISIADLEFADEESALSRALQRILTSNADCNFNSFNSSI
Ga0310107_139697	Ga0310107_1396971	F020652	PRNRFYSIADQCSSARPRLLFPVETRLSMRPFALRRRRLVFRSVSAAGSTLPACTFETIPKSPLGPFGIALPPPARLFVAARGTIHVRNPLPSPISGLSACDQASAPLQDLSIPRAQSAQLDSKQRSLPLRVARFSFAPRGARNNHLFTSASDHRSGSATSRQAHC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031615: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences