Sample 3300031633

Basic Information
IMG/M Taxon OID	3300031633 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0324298 \| Ga0310108
Sample Name	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU4 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU4 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	38721509
Sequencing Scaffolds	35
Novel Protein Genes	36
Associated Families	30

Dataset Contents

Total Genome Size

38721509

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	31
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

All Organisms → cellular organisms → Bacteria → Terrabacteria group

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Norway: Oslo
Coordinates	Lat. (^o)	59.9992	Long. (^o)	10.7901	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Norway: Oslo

Coordinates

Lat. (^o)

59.9992

Long. (^o)

10.7901

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001380	Metagenome / Metatranscriptome	709	Y
F003050	Metagenome / Metatranscriptome	510	Y
F004183	Metagenome / Metatranscriptome	449	Y
F006591	Metagenome / Metatranscriptome	369	Y
F011395	Metagenome / Metatranscriptome	291	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018722	Metagenome / Metatranscriptome	233	Y
F018933	Metagenome / Metatranscriptome	232	N
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F032349	Metagenome / Metatranscriptome	180	Y
F033877	Metagenome / Metatranscriptome	176	Y
F036126	Metagenome / Metatranscriptome	170	Y
F037987	Metagenome / Metatranscriptome	167	Y
F039646	Metagenome / Metatranscriptome	163	N
F040634	Metagenome / Metatranscriptome	161	N
F050832	Metagenome / Metatranscriptome	144	Y
F053691	Metagenome / Metatranscriptome	140	N
F058583	Metagenome / Metatranscriptome	134	N
F058585	Metagenome / Metatranscriptome	134	N
F059539	Metagenome / Metatranscriptome	133	N
F062325	Metagenome / Metatranscriptome	130	Y
F062326	Metagenome / Metatranscriptome	130	Y
F064923	Metagenome / Metatranscriptome	128	Y
F065397	Metagenome / Metatranscriptome	127	Y
F068321	Metagenome / Metatranscriptome	124	N
F076712	Metagenome / Metatranscriptome	117	N
F084949	Metagenome / Metatranscriptome	111	N
F098181	Metagenome / Metatranscriptome	104	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0310108_101862	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2180	Open in IMG/M
Ga0310108_109573	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1047	Open in IMG/M
Ga0310108_111990	Not Available	897	Open in IMG/M
Ga0310108_112029	Not Available	896	Open in IMG/M
Ga0310108_113305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	837	Open in IMG/M
Ga0310108_113343	Not Available	836	Open in IMG/M
Ga0310108_113717	Not Available	821	Open in IMG/M
Ga0310108_113829	Not Available	816	Open in IMG/M
Ga0310108_113937	Not Available	812	Open in IMG/M
Ga0310108_115224	Not Available	764	Open in IMG/M
Ga0310108_115462	Not Available	756	Open in IMG/M
Ga0310108_115576	Not Available	752	Open in IMG/M
Ga0310108_116756	Not Available	710	Open in IMG/M
Ga0310108_117819	Not Available	679	Open in IMG/M
Ga0310108_118119	Not Available	670	Open in IMG/M
Ga0310108_118378	Not Available	663	Open in IMG/M
Ga0310108_119643	Not Available	629	Open in IMG/M
Ga0310108_121247	Not Available	591	Open in IMG/M
Ga0310108_121468	Not Available	587	Open in IMG/M
Ga0310108_121605	Not Available	584	Open in IMG/M
Ga0310108_121689	Not Available	582	Open in IMG/M
Ga0310108_121951	Not Available	578	Open in IMG/M
Ga0310108_121975	Not Available	578	Open in IMG/M
Ga0310108_122058	Not Available	576	Open in IMG/M
Ga0310108_122471	Not Available	568	Open in IMG/M
Ga0310108_122531	Not Available	567	Open in IMG/M
Ga0310108_122591	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	566	Open in IMG/M
Ga0310108_122702	Not Available	564	Open in IMG/M
Ga0310108_122808	Not Available	562	Open in IMG/M
Ga0310108_123540	Not Available	548	Open in IMG/M
Ga0310108_124084	Not Available	538	Open in IMG/M
Ga0310108_124356	Not Available	534	Open in IMG/M
Ga0310108_124775	Not Available	528	Open in IMG/M
Ga0310108_125952	Not Available	510	Open in IMG/M
Ga0310108_126592	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310108_101862	Ga0310108_1018621	F030619	LERNTYKRLTLLVKSLPTEQSDTPSRKGARAHRHRGGDMSPLQQVWTTCWSGLVLSGWDSLRVAWHLHSWVVKTVPSRGLAFTVKELKALCHNVRGSALHSERWESTPCNIRKDVVDAFCRLAVRRPEDGFAFTRLSRSLPEPPLRECVRHLQAAKLMASTEFPTSVTALDSLRSFVALTPGVSGSGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEESGATQASFHAYAGDSLGGFCLKKASVVLRPCVGVAADLRESYRCAGLLYLRSQGKPFGMKATALRAPGYKVRVVGVPDCLTFVEGSWARSSLRWLAPGHWRIDGESREIPGGMHYRKGRRFASLDLSKATDGLSHAAVRVVIEGLAARGLIRPADLTMSLRSLGLERGATWSFPDLGDKAGEGSFLRGSPMGTPLSFVVLSWVNAWATSAFGRAITHGDDAVGRYRPGSKELDLYASRVSSVGASLNREKTFKADHSWTACEILALPREWSGDGMSLFYPPSIPPPALRAPVEADQRLENLWLRRMERIMKSRFPWIVKDPRLHLPVQVGGLGYTGRGLAVGVSVRQRLGALVSRGPSAVVAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRATEQWFQAGGDTHVPLESLLSFKSCLIEDEIRLLEGDKFKRKRVAGRPDRTRKGAVFRRLGVASCRPLSRRWGCSALIRWALLSRESKVTVPEDIASEIRERIPDP
Ga0310108_109573	Ga0310108_1095731	F032349	RLPLASGQGNVKPKGLSMGNFDYGAFFLLGVDSLIACIVTGPMFITQRRHERSELRSPDEHQRSSRWKWWAVGGLSALAVPYGLSYGLGDGVGYLLGTLLHFSISDSLRSVIETTLLVALGLYWIGIYVVASRMQGSEQLQRWSWRGIWVLPVALSIDNLTFGAVTGLPANESVWASAGLQALASAGLGLVGLAAGIGLAVLIPALRTRMYRTFGFVGVGVIATAGILLYTGW
Ga0310108_111990	Ga0310108_1119901	F039646	VHRHQHSHGELNRGEQEYWVSESGIVTQKNVDTGEPYSHPSVEGLFHQFTAKTKHGGVAWTVTKMGGDTYQFEFVSCKPEMCKDYVPLRFLKPETRVEWAFNDTVVRGFLGWTWMTLTQGDRKYQLVDCDLTDKLRRYIAGKPRNARMKSELMNYARRLTNKADIIAIHGGGAHEVLVGRMSDYVENAFYCDVRHELEVAMSYWRRNHVVTEALTTYYETGKMPLDVAKIQKAIKVGVKTLTSAAHIPALALGAGALATGGIGPAVLASSMAVTSLMAVGGVEVWSHYSDPPPKW
Ga0310108_112029	Ga0310108_1120291	F030305	MPLQFIGSCIVPFGFLVPVPGFPFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFRIACRAGLQSVSLQ
Ga0310108_113305	Ga0310108_1133051	F036126	LNSASPELALRFVWSRVNQPDTTFPQSPGIIRETRYLY
Ga0310108_113343	Ga0310108_1133431	F006591	HTLFPIRRSLGAPPLQVGGRLLDASPRGNAELSVSWQDRRPDCSKRLLGEAFQRGSHGPCRGSAPHKVMRPLRHGLVTAVRQVGPRELPPERWPDGTGLASYPSSDI
Ga0310108_113717	Ga0310108_1137171	F018933	PDHVPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVQITDCSAFLTPCLVLLADCSVLNT
Ga0310108_113829	Ga0310108_1138291	F098181	RSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETPPRIWIAPYTTLSLHASLLDYSTLAAFCSTSPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPL
Ga0310108_113937	Ga0310108_1139372	F006591	WALTPSQVGGRLLDASSRGNAELSVSWQNRRQNCSRRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0310108_114696	Ga0310108_1146961	F037987	FPKPTLDARLSAAAVVPKPFSTASGVIGLVAGPSGDFHHADFE
Ga0310108_115224	Ga0310108_1152241	F016972	EVRLTPLTDAIPIVNLYLTIYEFYIFSFGTKTSRYDPYELGYRRATKTFTK
Ga0310108_115462	Ga0310108_1154621	F033877	VTGERLSQAGWLNPSKSASQGAETGGRIHQFLWRRSHAAGDAKQELSGKRLKRNSLEPSQVTQDGFELE
Ga0310108_115576	Ga0310108_1155761	F058585	RFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASTPCTPARPVANLPARIGFVSFGSTGCKPPTCVECSALPLVLRRSIWLAPDDPGFIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLTRLAASSGLRLVLPLPLGWLRFQFAPAASPSVLTGREPLGLRLAAPSPAEPLMHSLFQLNLASPAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVY
Ga0310108_116756	Ga0310108_1167562	F064923	SLLVASLVGVAATAATIGPAQAATTPVLIKSCTIAKPKPMSHNANGTHIVYVILGHRTASSVTFAVGYRNASMHYLRRVTDAGSFAPGVTIDHTLPLYNDVTYAGAPTSLCAPVEVKWAGGTVWMSPTKP
Ga0310108_117819	Ga0310108_1178191	F059539	HIHGGDDFMGLFPEAEVKDMEKAIQVVVPQAGMEAKTLVPQSRHHGTFYRKRYVSDKVRTRPVPQFGRVLAKLNLRANQNTQVGDRDYMAGKYYSAAYEHRFVPGVKDLLLETAQQMSAKPHFDVRLTKMNEMGGVENIVAKVKNSDVLDLDSFCDYLRDVYGIGYEDLMDAYGRVASGAVGWLDQFTYVDKKGKQHSKHPPRAQMIGGEAIEALIAHDI
Ga0310108_118119	Ga0310108_1181191	F084949	LDARTSVEMQENSDIAVRLKIGRDASRWETTPVLWRAEAPLRMERMVSALVTASKEANNLFREVSYCSHNPRFDTERDMPDVETNNWR
Ga0310108_118378	Ga0310108_1183781	F053691	MKAFILFVVAILAIVFAQPSPPSWPATFSATIAISDQRFGTGFVRWYYDATLNKDRWDGTGFYQGETYFATRIFDHNAEIETSVFYQLDFAICITRAINGTSLPKPSFTNITYIGKALIDYDAVYHWIEVNRNGTFQYFDRVDNRETKRLDWHSVGHQDALSLDFLEFDETAQDASLFTVPAIIQPTCAPGNPDKFNFLTAPR
Ga0310108_119643	Ga0310108_1196431	F076712	KKNMKTVILVLAIIFALVAAQPSKPVWPTYFSASVGAFESGAPPSFFRWFYDASLNMDRLDGENFWQGEPYWATRIYNHVQQQETVVYFQQELAVCFQHPINRTIPKPPLNLLNYQAQGIVNFQEVYQWGYTQPNNFSFTYYDRQDNREPVRIDFTDYTRQPPFTATNIFWEFDATSQDTSLFTISPIILQTCNTPSSAYQPSTSPFRK
Ga0310108_121247	Ga0310108_1212471	F003050	MESAKAEIVAGEEKAGTSERSSFGMISCGAPESVEAVIAKAVAGEQTGKAYGAPKRGAQYGCMPVVSKAGNRVTWNH
Ga0310108_121468	Ga0310108_1214681	F040634	MHGTEHRISDCRAYSPQAPRLLVYPASASSLLDAPQLIFPKRDRLLVAAFPSPRTTPACADSALRSMVPAFYFAHSLAVRPARSAFWLPRQGLVSPSFRRHPRLKPVAFCTGPLCQLCRQVPLPFRSFSSLRIKALHGFATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0310108_121605	Ga0310108_1216051	F003050	MESVKAGAVAGEGKAVTSGRFSFGMISCGAPESVEAVTAKPVAGEQTGKAHGAPKRDAQYGCMPVVSKAGNRVTWN
Ga0310108_121689	Ga0310108_1216891	F004183	MERLRGANEDRAIPEGGPNGCEASRGVDPKGAKTPEGERKRAAQLAKQAGKECNGFEAWMQPEAGANQRLAAEPKSRTGRNTGKRVSEVAGQDL
Ga0310108_121951	Ga0310108_1219511	F011395	MAAWKRAVFSGERKAVARCRFQPERTQATSKALIRGPQKGWRGAEEIPPVIRLQSSEPCMPASGQAELRIT
Ga0310108_121975	Ga0310108_1219751	F001380	PGFTVRFSDPSACGRSLCNKMLRLNSSSLSAAAFQRAAGHSNQQIFVGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKSFANPFDSRLFRSVRFRGRTGATSMPGTRFPLHPSILRIHPQSPLPFRPSFENPSDQSVRPVQNPEARLTRRPIASCSPPLPLAIPLRISARNSLRLSLTYRSVN
Ga0310108_122058	Ga0310108_1220581	F062325	PISSLAHHGQATVLNIAYRIAVRFACLHPGNRFGGNRFKAFKRAAASFPKRDRSLVAAFPSPATASAFADSIPGSMVPACYFAVSSTG
Ga0310108_122471	Ga0310108_1224711	F003050	MESAKAGAVAGEGKAVTSERSSFGISCGAPESVEAVTAKPVAVEQTGRAHGAPEHDAQYGCMPVVSKAG
Ga0310108_122531	Ga0310108_1225311	F000396	QLNPPPACNGTELCNQNCRVSSLQLPAAPLRKQRINASRLTCQLSWLEPVSRSGLSLSRNDCLSPGHHFEVEAPDLLLQHPTVSSSCPFRFRFPSALQFALARARSIPKSRCLTPARHSRPFLGSPLPFGAFRALKDQSVQPDSRLGSSPSERSRLPITPRHRIHFLVGLDTGSPLQAR
Ga0310108_122591	Ga0310108_1225911	F065397	VVVRVFVSRLYSPCKVSLVMAIPKSTVTTDRKWLEIAPPRRVCVGRRRPLEKTLRPIAEERSLSNGELLDGLCPSFPAVSGFRAEGDNERFESAEC
Ga0310108_122702	Ga0310108_1227021	F062326	RVHGTIERTTGMLGVRSAAGCLRFIVSRSPATPFGACRVNAKNASSGLASCRSRKLGTAFRSPVTTLSPPLRGQRSRPAPSLPRRCFFAYPLDQRLLRSVRFRSRNRANSSPTTRCPRRSPALLRCHPVSTPLQVVCTLRIKAFNRLHHNKLASPDARLSFAPRGALFRFRPGSMLETRFRPARLIV
Ga0310108_122808	Ga0310108_1228081	F059539	TLVPQSRHHGTFYRKRYVSDKVRTRPVPQFGRVLAKLNLRANQNTQVGDRDYMAGKYYSAAYEHRFVPGVKDLLLETAQQMSAKPHFDVRLTKMNEMGGVENIVAKVKNSDVLDLDSFSDYLRDVYGIGYEDLMDAYGRVASGAVGWLDQYTYVDKKGKQHSKHPPRAQMIGGEAIEALIAHDI
Ga0310108_123540	Ga0310108_1235401	F068321	RCHRMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWISVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDSAWKVGLRIRSLFLFRRSLP
Ga0310108_124084	Ga0310108_1240841	F058583	LGVRSAANLSLNLRTAARRRCFSTCAGSVPRSILKLKSLRRSWKLETAFRSLATTFAHHCEVNVPDLLLRFHTENPAEPVRSRTPPLRSVFEAESGRILRPLPVALRRFPALLRFHSISTPLEAHLQSPPDQSVQPSSSRGSLPDETLACPLLPSARSFRILPRITALGAPYSARLIVP
Ga0310108_124356	Ga0310108_1243561	F001380	ADVRSATRCFRISSSSLAAAAFQHASGHSNQQNVIGLSIPPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSETLAIPFDSRLLRSVRFRGRTGATSTPGTRFPRLSPTFLFFPRSPLPFRSSFENPPDQSVQPVPNREARLTRHSIVTRSPPLPLSILLRIDARNSPRPA
Ga0310108_124775	Ga0310108_1247752	F036126	VNSASPKLALRFMRSRVNQPDPAFPQSPGIIHETFNLNFTFD
Ga0310108_125952	Ga0310108_1259521	F050832	MVMEAAAANRTSLAKKKKDGPSKAKLRSILLSVLHV
Ga0310108_126592	Ga0310108_1265921	F018722	VIVPSTTVARVKGTAAPAATILSPVARDYPSRAREGFFRPSHCD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031633: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRU4 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences