Sample 3300031810

3300031810: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) (v2)

Overview

Basic Information
IMG/M Taxon OID	3300031810 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290745 \| Ga0316044
Sample Name	Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) (v2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	52006805
Sequencing Scaffolds	54
Novel Protein Genes	54
Associated Families	50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1
Not Available	42
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000605	Metagenome / Metatranscriptome	993	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001418	Metagenome / Metatranscriptome	698	Y
F003497	Metagenome / Metatranscriptome	483	Y
F005410	Metagenome / Metatranscriptome	401	Y
F006375	Metagenome / Metatranscriptome	374	Y
F009043	Metagenome / Metatranscriptome	324	Y
F010305	Metagenome / Metatranscriptome	305	Y
F010889	Metagenome / Metatranscriptome	297	Y
F012024	Metagenome / Metatranscriptome	284	Y
F016913	Metagenome / Metatranscriptome	243	Y
F018722	Metagenome / Metatranscriptome	233	Y
F018933	Metagenome / Metatranscriptome	232	N
F023797	Metagenome / Metatranscriptome	208	Y
F026569	Metagenome / Metatranscriptome	197	Y
F028566	Metagenome / Metatranscriptome	191	Y
F030619	Metagenome / Metatranscriptome	184	Y
F032070	Metagenome / Metatranscriptome	181	Y
F032349	Metagenome / Metatranscriptome	180	Y
F034200	Metagenome / Metatranscriptome	175	Y
F034461	Metagenome / Metatranscriptome	174	Y
F037019	Metagenome / Metatranscriptome	168	Y
F038927	Metagenome / Metatranscriptome	164	Y
F038985	Metagenome / Metatranscriptome	164	Y
F040212	Metagenome / Metatranscriptome	162	N
F049347	Metagenome / Metatranscriptome	146	Y
F050386	Metagenome / Metatranscriptome	145	Y
F050832	Metagenome / Metatranscriptome	144	Y
F055924	Metagenome / Metatranscriptome	138	Y
F059538	Metagenome / Metatranscriptome	133	N
F062325	Metagenome / Metatranscriptome	130	Y
F066368	Metagenome / Metatranscriptome	126	Y
F067447	Metagenome / Metatranscriptome	125	N
F068321	Metagenome / Metatranscriptome	124	N
F068527	Metagenome / Metatranscriptome	124	N
F068861	Metagenome / Metatranscriptome	124	Y
F071421	Metagenome / Metatranscriptome	122	N
F072370	Metagenome / Metatranscriptome	121	Y
F073871	Metagenome / Metatranscriptome	120	Y
F080063	Metagenome / Metatranscriptome	115	N
F080713	Metagenome / Metatranscriptome	114	Y
F089697	Metagenome / Metatranscriptome	108	N
F092084	Metagenome / Metatranscriptome	107	N
F093894	Metagenome / Metatranscriptome	106	N
F094983	Metagenome / Metatranscriptome	105	Y
F097372	Metagenome / Metatranscriptome	104	N
F098181	Metagenome / Metatranscriptome	104	N
F099689	Metagenome / Metatranscriptome	103	N
F102319	Metagenome / Metatranscriptome	101	Y
F102578	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0316044_100052	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	6376	Open in IMG/M
Ga0316044_102114	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae	2307	Open in IMG/M
Ga0316044_102404	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2217	Open in IMG/M
Ga0316044_102826	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2096	Open in IMG/M
Ga0316044_105121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1661	Open in IMG/M
Ga0316044_106647	Not Available	1454	Open in IMG/M
Ga0316044_107625	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1349	Open in IMG/M
Ga0316044_107841	Not Available	1327	Open in IMG/M
Ga0316044_108558	Not Available	1264	Open in IMG/M
Ga0316044_110096	Not Available	1141	Open in IMG/M
Ga0316044_114868	Not Available	871	Open in IMG/M
Ga0316044_115088	Not Available	862	Open in IMG/M
Ga0316044_115230	Not Available	856	Open in IMG/M
Ga0316044_116021	Not Available	823	Open in IMG/M
Ga0316044_116085	Not Available	821	Open in IMG/M
Ga0316044_116455	Not Available	807	Open in IMG/M
Ga0316044_116823	Not Available	794	Open in IMG/M
Ga0316044_116988	Not Available	788	Open in IMG/M
Ga0316044_118013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
Ga0316044_118727	Not Available	732	Open in IMG/M
Ga0316044_118853	Not Available	728	Open in IMG/M
Ga0316044_118911	Not Available	726	Open in IMG/M
Ga0316044_118958	Not Available	725	Open in IMG/M
Ga0316044_119855	Not Available	701	Open in IMG/M
Ga0316044_120473	Not Available	686	Open in IMG/M
Ga0316044_120914	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
Ga0316044_121676	All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.	658	Open in IMG/M
Ga0316044_122150	Not Available	647	Open in IMG/M
Ga0316044_122577	Not Available	638	Open in IMG/M
Ga0316044_124159	Not Available	607	Open in IMG/M
Ga0316044_124330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	604	Open in IMG/M
Ga0316044_124839	Not Available	595	Open in IMG/M
Ga0316044_125008	Not Available	592	Open in IMG/M
Ga0316044_125377	Not Available	587	Open in IMG/M
Ga0316044_125503	Not Available	584	Open in IMG/M
Ga0316044_125760	Not Available	580	Open in IMG/M
Ga0316044_125779	Not Available	580	Open in IMG/M
Ga0316044_125788	Not Available	580	Open in IMG/M
Ga0316044_125826	Not Available	579	Open in IMG/M
Ga0316044_126289	Not Available	571	Open in IMG/M
Ga0316044_126319	Not Available	571	Open in IMG/M
Ga0316044_127332	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
Ga0316044_127528	Not Available	553	Open in IMG/M
Ga0316044_127584	Not Available	552	Open in IMG/M
Ga0316044_127696	Not Available	551	Open in IMG/M
Ga0316044_128295	Not Available	543	Open in IMG/M
Ga0316044_128315	All Organisms → cellular organisms → Eukaryota	543	Open in IMG/M
Ga0316044_128729	Not Available	538	Open in IMG/M
Ga0316044_129121	Not Available	533	Open in IMG/M
Ga0316044_129645	Not Available	527	Open in IMG/M
Ga0316044_129747	Not Available	525	Open in IMG/M
Ga0316044_129977	Not Available	523	Open in IMG/M
Ga0316044_130729	Not Available	515	Open in IMG/M
Ga0316044_131898	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0316044_100052	Ga0316044_1000521	F072370	MRVRCPVPVETRFSIRPCALRQRRSTLRQTSAAGSTFLACIFETIPKFSSARSVANSRPRLAFLLPLEVRSMLATRCRFRFRNSAPVLRPPLPVGISQSLRLVAPSLIPNVEACLCESPDFPSLPAALG
Ga0316044_102114	Ga0316044_1021141	F049347	LKNYKVLNSSFAYSHIEECMLYYDRRSKTNIIPSCLEPYVRGVHNLYLKQIPSCLTLRKAGSRLSKEVKPFLAEDGFFNLSLDDEGNRSSLLEDALYESDEFPTTPVVEDEDVPRLAKVDTRGIYEDPFKILAGWAFASQYLEEKPKINVWPGGTHRLQDKISPALCGSDRKNVTWFTKLRSHEEKMFLLFNHTHWGHRIQSARHSAKGDDPLRNFANTLFRRISFFVRGKHDPLWTEDERKSLADYSVERNKTYRAQRLLEVLKTVDGIFLQRFLSYPEEIWTWEKYDLFVIQAISILLTDEFIDGEVTDFSLDEQVTHYEELKRARKQFKQVIHLDEPREGISLMDTTPRWVASFLRPVWDRAVRHEGFSRLYLAGTLSQTRGSGTPPPLVVLRSKRKFLLSVDSPPPGISKTEDALIVRAIEDVMREIPDHIFTGLDTKARITVTGAACWEANRSEGGTAQALLDLMAKYEDMSIPIRDMDSNKIIRFVSKDNFESIGTAMFHACLDEVLHMTVEELRSVHLTVVREPSKARVVTKGHAALKVVLDTISRICSWPLKKGIKSSSSGMGKSHHGWNLFKDFTSEEMYDLLFSEDRRRRVEDPFNDHIDRVCYWQDLWFCSTDYQEATDRMVHRFARRIATKWMKKCGIPPLLQGIVLGVCYMPRKVYFTATGPLSKIGHKVDDQIRYVTLYRGVLMGDPLTKVVLHFSNIVSRKIGEGLASGDIFNHFRNSSEAAEAFLSGMHSKSAIPR
Ga0316044_102404	Ga0316044_1024041	F030619	MSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWACRSAPRGVAYQVDCVKKLCHNIRGASLHSKRWKVQPCGIRKDVVDCLCRLAVRSPENGFAFTRLSRSLPEPPAREAVRHLQSAAVMASTPFPASAAALVSLRSFVSLSGRARRNLRGPRRLPSSNSSCLEWPATRGGIDGYLEHLGHGLEERGATQAEFSQFAGDSLGAFCLSRARVVLRPCSGVSEDMRESYRCAGLLALRAERKPFAMKATALRAPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTIGSEPREIPNGLHYRRGHTFRSLDLSKATDGLSHAAVEVVIEALVRRGAIRPADHLMARRSLGLVGNTTWSFPDPVGEVVFSRGSPMGTPLSFVVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDIYASRVASVGAQLNKGKTFRADHSWTACEILALPRENCEDRMTLFVPPSIPPPGLRAPVEADPRLENLWLRRMERVIKSRFPWIKCDPRLHLPVEVGGLGYTGRGLAVGRGLRSRLGALVSRGPSAEIGAALIGKKPFREVGLYPHPLVRVPKPKAYWKAVKAVNQELAPSGADLVPVPLESFESFKCQLVESELRLVEGDRFRRKRVAGRPDRNKRSAVFRRLSVKPAKPLSRFGGLASLKRWALTCKNVRVTVDQDIASEIRERIPDPPQPTQGGKGMQG
Ga0316044_102826	Ga0316044_1028261	F030619	SLVKSLPTEQSDAPSRKGVRAHRHRGGELSPLQQVWTACWSGLVLSGWDSMRVAWFLHQWACRSAPRGVAYQVDCVKKLCHNVRGASLHSKRWKIQPCGIREDVVDCLCRLAVRSPENGFAFSRLSRSLPEPPVKETIRHLQSAAELASAPFPTSVAALESLRSFVSLSKRARRNPRAPRWLPSSSSSCLEWPATRGGIDGYLEHLGHGLEVRGATQAEFSRFAGDSLGAFCLSRARVVLRPCSGVSPDLRESYRCAGLLALRAEGKPFAMKAAALRAPGYKVRVVGVPDARTFIEGSWIRESSRLLPPVHWTINSESREIPGGLHYRRGHTFRSLDLSKATDGLSHAAIEVVIEALVRRGAIRNADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFIVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDVYAKRVASVGAKLNKGKTFRADHSWTACEILALPRKHGEDRMSLFVPPSIPPPDLQAPVEADPRLENLWLRRMERVIKSRFPWVKCDPRLHIPVEAGGLGYTGRGLAVGRSLRSRLGALVSRGPSAEIGAALLGKKPFREMGLYPHPLVRVLKPGVYWKVAKAVDQDLLPYGKDLSTVPLESFEIFKCQIIESELRLTEGEKFRRKRVAGRPDRNKRSAVFRRMSVKPAKPLTRFGGLACLKRWALACKSVRVTVD
Ga0316044_105121	Ga0316044_1051212	F034461	VGLIYPVGGVVADALSRKDEDVEAFLCAISIIQLDWIIEARDEWKNDEKVWTLIQRLQ
Ga0316044_106647	Ga0316044_1066472	F068861	MPSLTSTRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVITPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0316044_107625	Ga0316044_1076251	F032070	MSFQATPNMLGVPDFGLIHIDPALTAQAFQAYLDTASKLTGVSLDDISRRVMSIPADPGRVTLTDLLSLGMKLFDAIVWLTAGRPPAYPLVIDPTMTKENVPSLHEVARAVFYTYFMLLTQARYPVPRSVSEKPRIPNFLRAIMGMTEEQHVYIEQICSFAPQKFDPAWVRYVEFQNFGQEVLSRFGLGVAGYRMFGPFALYEPRPDITPALRLSVQFAQLVSRQPASWDVHPLTRNTNILTARGNLNKNLGNLILDVFTDAQIAEMVTSKILYARPEREAAHRNYLTWGIIDDISGNSRIFRV
Ga0316044_107841	Ga0316044_1078411	F068861	SLIPQQLFDMPSLTSTRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
Ga0316044_108558	Ga0316044_1085583	F097372	VSGPLNYNYSTIEMSDESIAHTIRNILKQCNSTVISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGFRARRLELARELKQKQIRLTAAPPGDRSQINLEIGKLLSERARLDKLIKQFDATTIA
Ga0316044_110096	Ga0316044_1100961	F010889	MKISDGAFFVTAQRIIEDVLRFQVDKRNRAMRAGYLDDPENLFCEELKTWAAVQLCTWEISKTAANHVEARIAYLEEVLLTPSLFDNPSTLGEATIQQVIVNTRRKLKYQLLAEIEKELASENAVRAFDDIKKHCNLLIYNCYQFLAHVFRAEIEGHESAADKLLKTLQEDPNLKNFMGDSLTEVLDAIQGVKARSEKYSFDLRENGLRPVLSFLDVTNLSENDPLLPHIFEGPWSGIEEFFQGNAFITYKFLKAHALLLEFGRLFVVIDKARNCAKQGGTLLVYGVANAQLNSLLDSTKSMVNAIRDEFASVCKIAECAFEKLVYDNKATPQRSKWIGHFKFVFPASNAINDAVRQLLEDVGLIKLHANSMTLYERFQK
Ga0316044_114868	Ga0316044_1148682	F018933	LRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0316044_115088	Ga0316044_1150881	F006375	VVSLVRSVKYGLVSILSLNMSSTNSQVPASTGTIGATTAAVTQLVQNTGAFRSIPRGISAIGQGHDAGLFSREWTVITYYNTDDWTQGGPFATAGSRFIHGSVVPSTTGIVAGITHRFSDAKFLKLELKFVPMRGAAGHVFDIAVGVSQGRETAPADRTAIELLEGNTYVDMVPLMSVSGFPAPATWEINMDLPFITDVFKPANFYQQPPRLNYNARLHFPAALTTAQPLLAVRIRVVGAAF
Ga0316044_115230	Ga0316044_1152302	F089697	LITRSTVGAASSGYPSGRPPAFAGAATSGCAGFQNSDLRRRPALQLDRWPTFRLGSASCPSARPAANLRLASTVPLFRSSFGDPSGLRLTILVSSSLRPTILVPPGLRRMALPPARPTTYLRFASMPSFGSAGGFIRLAPSAAPASRLAPPPVCTGCFTLRLYRP
Ga0316044_116021	Ga0316044_1160211	F067447	EINTSRVAGPNPPHFAPRRNYFLLDTYTKRYTRIAPWLTLSACAGRGLLRAQHFSALPRSRIAPRSTLGFQRQARIAPYPALPALMLHPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVLDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDTWPSVQRPDASVLSTSRPALPADCSALTALRCASYGLLHAWHLALAPVKDYSSLDT
Ga0316044_116085	Ga0316044_1160851	F068527	FNLDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAG
Ga0316044_116455	Ga0316044_1164552	F010305	LKRAEKPHSKFSGRKVLDGPATRPKTPLAVENGVGKLTAPEKGAPNVSMGKRDWRTPIP
Ga0316044_116823	Ga0316044_1168231	F080063	VALGQRTVKSGGRPRAKGGDAEPQSQTCLHLVRKPASANASPSELRGLTRRFSRRKALDGPAMRPQFRLPWRMASGSWQPRKGAPNVSVGKRAWRTPSP
Ga0316044_116988	Ga0316044_1169881	F098181	ELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETPPRIWIAPYTTLSLHASLLDYSTLAAFCSASPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPL
Ga0316044_118013	Ga0316044_1180132	F034200	VAPGQRIAKSDGRPGANGKDADPQSQTCLYLVRQPASANASRSEL
Ga0316044_118727	Ga0316044_1187271	F066368	LTARSPDATGLASSLRDCFFSQSSDAIFSTASLRKFFHAACQAFVAFPLHAPALFAFQRFSFGELTFYFEFRRATHTVLIRSSNQSLFWQLRFVQTRNLPELLHSTRSGFSSPLAADPSFAFGARERARGTGEFCLRHPAFRRFSFGESTFLILDPAEPFAPC
Ga0316044_118853	Ga0316044_1188531	F032349	TIYYGQCRTLDSHPIGILRSFHLRKRPALASRQGGTVKPKGRSMGSFDYGAFFLLGVDSLIACIVTGPMFIKQRPRENSEVRPPDEHKRTSPWKWWAIGGLSALTIPYGLSYGAGDGIGYLIGTLFHFSISDSLSSVLETTLLVALGLYWIGIYFVASKMQGSERLQKWSWRGIWVLPVALSIDNMTYGAVTGVPANASVWASAGLQALASAGLGLIGLAVGIGLAILIPALRTRMYRTFGF
Ga0316044_118911	Ga0316044_1189111	F023797	MLGKPLMLSPISIRCFGAARVDTIPLLDRTLHRPAVRRMSLPMSFESSLPQLAPQAIFRSLSNLSSSCVAGNVDFQF
Ga0316044_118958	Ga0316044_1189581	F050386	PRKSYLWKRISELHKLMVDIQTTHAKLGSQDGNSREH
Ga0316044_119855	Ga0316044_1198551	F093894	VTNAGIQGQPRSNPCIALGASVEQEVIPDRGKVQRVGTGNSPNFSIIF
Ga0316044_120473	Ga0316044_1204731	F001418	QSESSGEAEFIGSSDGVRTSSNANEESGGKERLETVPNRVK
Ga0316044_120914	Ga0316044_1209142	F073871	MGTKNVLIIDGNEAMQQLRARVMRSREVHVHTAKSVTEAELLWVPD
Ga0316044_121676	Ga0316044_1216761	F016913	GDDIAVGMHERGLVLKSWVDHCALAGMTLKAHERRYYCDLTFLSRFFVPCGDRNVMVPLIGKALCRFNARANRNQDVSDAQYMAGKSLSYAYEFRHVPYLRDRFLQRFRSTGVSIGCIKLHDLTWFSRQGVSGTTDVLQAAVDEPLVLSEDEFLEVVMAKYDMGLYDMDFLCDKLINEDVPYVFDDERYHLFAHEVE
Ga0316044_122150	Ga0316044_1221501	F092084	RDVVRFTADYAASDLFEQCIGCYPLARNDLNDSLLCEESPGPPPMIDPDVMTDDEVERWMAKYVRGNTSIHTVSPSQNVPIRK
Ga0316044_122577	Ga0316044_1225771	F001024	MRPTTPLAVENGVGKLAAKVRRMSARERESGELPS
Ga0316044_124159	Ga0316044_1241593	F038985	PRFPKKRRLRSQNGSRSSGPEKLLKIVNCAETEKLKEVMVGVQVE
Ga0316044_124330	Ga0316044_1243301	F018722	MLPATAVARMEGRAAPAAAFLSPVAREYPSRALEGFFRPPRCD
Ga0316044_124839	Ga0316044_1248391	F040212	NNTDGESPYNEAVQFTLSSASHITAIATAVNYIVQGTSTTFELNIEADASGVPSGTPINTNPYSVTIDSQTFGQCCEVEGKPLAGSGLSLPAGTYWVVWGTSSSSDLFAEVNQAIHNQTTDVNVAYSPSSGAAGSWTAYSTNLPFAVRVKGTTP
Ga0316044_125008	Ga0316044_1250081	F018933	TSRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIVDCSAFLTPCLVSLADCSVLNT
Ga0316044_125377	Ga0316044_1253771	F026569	MHGTEHRVSERRALRLLAPRKPFYPASASKLPDAPQPLCLSKTGPFARNGLSLVRNDLRLRGSHYGVDDPGLLLRSLAYRFSCPFGFLTPPPAAGLPQLPAASTPQTRCTLYRPALPAVPPASAPLQEFSLPRDQSLGWCRNRSVHLPESPDLRSLPVAFPLKDSATDHRSRSATFPEACCSSN
Ga0316044_125503	Ga0316044_1255031	F003497	PSDPLNSPLPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPELIRHFYLLEAFVSERPFARPQRLLSFENHRGEVKAPDLSLRRNSELFFQPVRPFAPTLDGVHHASGDVRRTRPVAVSRAQNSQTSIQLSLPFRTFIPPDRSAQSAAGSEKLTLVRGPFFLRSPKASITF
Ga0316044_125760	Ga0316044_1257601	F062325	DPIPSLAHHGHATVLSIAFRSAVRFACLLHGNRFGGYRFNAFRRAAAYYPKLNRSLVTAFPSPATAPAFADSIPGSKVPACYFAVSLTG
Ga0316044_125779	Ga0316044_1257791	F012024	MHGTEHRVSERRALRLLAPRKPVYPASASTLPDAPQPLSLSKTGPFARNGLSLTRVISACADSIPGSKVLACYFAHSLAGLPARSALWLRRQPLVCPSFRLHPRLKPVAFFTGLLYRLCRLLPLPLGSFRSLRINASTGFATVRSAFRNRPIFVRSPQPFHLKIWLRIIVPDPLHFRRLA
Ga0316044_125788	Ga0316044_1257881	F071421	LPPLSFPRDGPPQFHSSLTATMVCGMCLSGGGNLSPITPKSGYRFGPTPRNLAKVVAIGQPPTDPIAARWENQRDFS
Ga0316044_125826	Ga0316044_1258261	F059538	GGRVVQPLLRPSATPAVRLQLSLPLLPLAAPVSNLRLASAALPPARPRANSPARIGVFSPGSVGGKCSAFAAYYALPIDWLLTFQLALVSGLQLGLRLLPTHIWRCPSARLALQLPVLTGCCCNN
Ga0316044_126289	Ga0316044_1262891	F102319	MITGPITSWSKSLLRYKTKPMVMDVVVADKTNLTKEEKDGSSR
Ga0316044_126319	Ga0316044_1263191	F009043	LGSAPPSFEGNGSMPTGSPASLPGWNRHLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRHAQDPYQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARCS
Ga0316044_127332	Ga0316044_1273321	F094983	AETVLVSSPLGLCVQGSVVYCNKLPSDDHIVGIRLDAPIERWMEALEFRES
Ga0316044_127528	Ga0316044_1275281	F068321	ERCHRMSLYRMLTSVSERLHSIHWFRTDSLGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSLWMSVTRILVTCWARFDHDRGSLSPRLGEPLAAILTRIASGVFVADDFRVALSLAADSRRARYPLLRTDFAQKVGLHIRSLFLFRRSLSC
Ga0316044_127584	Ga0316044_1275841	F102578	VATTRRTLKSVAGEWQTPNPDRPSADRTPSMPVVRSIVP
Ga0316044_127696	Ga0316044_1276961	F055924	MEGPLVSDTTELLSGAASASGESPTGHQAAESGGTAPRSAGRSGGDLSRL
Ga0316044_128295	Ga0316044_1282951	F005410	VIVRLGLLLPATEFRPHRINAPDRASQLTPVRNLLLGTTFRSLETTARFRATFPRSKLLAYPFGSMLRFRQTRSITPLLHAIRLAPDSANSLRATRCLVPSKLSRLFFNSPLPLGAFGPLPIKAFKLTTSREAHRIETPDFLRSPLPAVFKRPAADQCSRLVTFRSAY
Ga0316044_128315	Ga0316044_1283151	F000605	VFAQTPTKPVWPKAASASIFVEGWGEERHERHFFRWFYDETAGKERIDGPQRWQGELYHTVTILDATTQKEWFVVHQGSLVTCFVGAWNHSLPHPNYDNARFAGKAEIDYRVVNHWIERGPEGRESQLYDRADNGQIVRIDFEDRRRREVTVHFHEFNAGTQDPSRWDLPAQIKNICNQI
Ga0316044_128729	Ga0316044_1287291	F006375	NSQVPASTGAVGTTTAAVTQLVQNTGAFKSIPRGISSIGQGHDAGLFSREWTVVTYYNTDDWTQGGPFATAGSRFIHGSVVPSTTGIVAGITQRYSDAKFVKLELKFVPMRGAAGHVFDIAVGVSQGRETAPADRTAIELLEGNTYVDMVPLMSVSGFPAPATWEINMDLPFITNVFKP
Ga0316044_129121	Ga0316044_1291211	F080713	TFLVISLNKILTELKNVSFWYSKKTIPVITDSGLVTFRIIGNGARLRLTYNVVQGPEDKFPRVVKGKADFDISDMEIEFDKTTIKHDILLPMITQMFKLQIKAQMECAVEKNLNGFLEKLGNLMTETIGTMNRPFLSGLEFARKAVKSTQFAQVYEGRHQKLE
Ga0316044_129645	Ga0316044_1296451	F050832	MVMDVAAADKTSLMKEKKDGPSRAMLRSILLSVLHI
Ga0316044_129747	Ga0316044_1297471	F038927	MIADGLTKALPKQRFQSFVNMIGMVDIKERLAKEKQLEDLREKVRARRKVSD
Ga0316044_129977	Ga0316044_1299771	F037019	TSPHGPISPACAGENSGIEPILQATCSWAWARLGSLSVNQQGAAFPHRRYDRDSFRRDRTPNRVAWRFPDWTAVGFAFPSPFLGSAPLGIPLPEHSRLVGLDLAIDGRLSLHGGQITGGDTNPDCQIRRFCAASSGGLVAGRRL
Ga0316044_130729	Ga0316044_1307291	F028566	MRIRRNILATAILTVGTIGSVVAGPVLALTTAAAPAGAAVAVTIKPAMVTYGG
Ga0316044_131898	Ga0316044_1318981	F099689	RANDMLDGTFTLNRPTQWNKTMLPAGTYQFKLVRTQTDANMLVVSGVKLSMSIYVFAQAACETCRNAALTLQVQGDHRVITALSLPGFHVDFSSRAALVDAKAPADNSTPYSEQIDIQVGSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031810: Metatranscriptome of spruce roots microbial communities from Bohemian Forest, Czech Republic - CRA1 (Metagenome Metatranscriptome) (v2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences