Sample 3300032209

Overview

Basic Information
IMG/M Taxon OID	3300032209 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114374 \| Gp0306209 \| Ga0334665
Sample Name	Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_370_1 (Metagenome Metatranscriptome) (v2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	39925105
Sequencing Scaffolds	1
Novel Protein Genes	1
Associated Families	1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Aquatic Microbiome From Duckweeds Obtained From Rutgers Duckweed Stock Cooperative (rdsc)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Aquatic Microbiome From Duckweeds Obtained From Rutgers Duckweed Stock Cooperative (rdsc)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface

Location Information
Location	USA: Knoxville, Tennessee
Coordinates	Lat. (^o)	35.9573	Long. (^o)	-83.9276	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F037234	Metagenome / Metatranscriptome	168	Y

Family

Category

Number of Sequences

3D Structure?

F037234

Metagenome / Metatranscriptome

168

Scaffold	Taxonomy	Length	IMG/M Link
Ga0334665_111500	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1072	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0334665_111500

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata

1072

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0334665_111500	Ga0334665_1115001	F037234	NYEKMNKYLGLDPKASDLTMIRVVKARTGYRCKDIR

Scaffold ID

Protein ID

Family

Sequence

Ga0334665_111500

Ga0334665_1115001

F037234

NYEKMNKYLGLDPKASDLTMIRVVKARTGYRCKDIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300032209: Metatranscriptome of plant-associated microbial communities from Arabidopsis thaliana in University of Tennessee, Knoxville, TN, United States - Col_370_1 (Metagenome Metatranscriptome) (v2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences