Sample 3300032541

Basic Information
IMG/M Taxon OID	3300032541 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085735 \| Gp0095243 \| Ga0352983
Sample Name	Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	53939285
Sequencing Scaffolds	17
Novel Protein Genes	18
Associated Families	10

Dataset Contents

Total Genome Size

53939285

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	4
Not Available	12
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.

Not Available

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Ecosystem Assignment (GOLD)

Name

Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Type

Host-Associated

Taxonomy

Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Illinois

Coordinates

Lat. (^o)

40.102108

Long. (^o)

-88.227299

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F006460	Metagenome / Metatranscriptome	372	N
F006970	Metagenome / Metatranscriptome	361	Y
F028678	Metagenome / Metatranscriptome	190	Y
F036516	Metagenome / Metatranscriptome	169	Y
F037523	Metagenome / Metatranscriptome	167	N
F037527	Metagenome / Metatranscriptome	167	Y
F049349	Metagenome / Metatranscriptome	146	Y
F063247	Metagenome / Metatranscriptome	129	Y
F078088	Metagenome / Metatranscriptome	116	Y
F094710	Metagenome / Metatranscriptome	105	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0352983_1000155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	795	Open in IMG/M
Ga0352983_1003627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	894	Open in IMG/M
Ga0352983_1003876	Not Available	637	Open in IMG/M
Ga0352983_1003969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	955	Open in IMG/M
Ga0352983_1013193	Not Available	825	Open in IMG/M
Ga0352983_1013847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	1013	Open in IMG/M
Ga0352983_1016034	Not Available	905	Open in IMG/M
Ga0352983_1019095	Not Available	728	Open in IMG/M
Ga0352983_1020603	Not Available	763	Open in IMG/M
Ga0352983_1027880	Not Available	570	Open in IMG/M
Ga0352983_1028536	Not Available	610	Open in IMG/M
Ga0352983_1031039	Not Available	1065	Open in IMG/M
Ga0352983_1034836	Not Available	962	Open in IMG/M
Ga0352983_1035106	Not Available	636	Open in IMG/M
Ga0352983_1035124	Not Available	687	Open in IMG/M
Ga0352983_1041009	Not Available	746	Open in IMG/M
Ga0352983_1081158	All Organisms → cellular organisms → Eukaryota	519	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0352983_1000155	Ga0352983_10001551	F037523	ENLIVKYNAEKFAKLFKIFSNKTVNPPKRDLVDLMKAEYLYMNGLGASNCDLFKLLRRYWIRMVCSSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGVFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352983_1003627	Ga0352983_10036271	F037523	TKNKLSFKGKSAKRIKAPEDKSVTGMILPSLVRYLDEKFIGVKAWAMNNLINKWRAEKFAKMYKIFSNKITVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCERINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKIDKKY
Ga0352983_1003876	Ga0352983_10038761	F006970	SDNPLLDKRIVKSTLKTHAYSTPWDQPIYQEKIVSNQKYSKIESVFEIPYLKDAPDYRSGDFFHRFDICVEKKKNLKKTLDDITKRYNDIMAIFNKDLDRIFAGSPSKEDKDRMKELIIKMMGIYHEFREIEHYDDIFKKEVEERKLTFEGDEKEKYEEGMAILSKGFPFQLTIAHQKMNDNFRRSINRFFLEKNMRFYKPAEIDDAKVYKE
Ga0352983_1003969	Ga0352983_10039691	F037523	RNHANYLFYKLLLTKRETGNRIESFESGPTPKKISFKGKSNKKVKVPEDRSVTGMILPSLVKYLDDKFKDTKAWAMENLINKWKAEKFAKVLKAFSNKSTQPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMVMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKISKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEK
Ga0352983_1006075	Ga0352983_10060751	F037523	EKFAKLVKTLSNKTIVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWVRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFMSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKIEKKY
Ga0352983_1013193	Ga0352983_10131931	F094710	EVLCRITSVKSKFIYTLINNKLIGRMDIENYQGNVEKIQKLIKETVGIRKMSVESRGSTNSDVTNNYPKELLIKAEVIDIIKLQNKLNDSELGIKKKKIKKLKIYKIVPQIDFNSIDIDSDENIKINSGLTNEPVSSNLDITGKEPNIGIISSIKPLNKYPILLKIKANLEEKLQIPFNEIPLNMLSDDGEIKYKLGQKIKFLYDKKNNSCKIFNNNINDKEEIKPGKKYICRILKKLDGKGLIISIRKDIETFVDICEITDFLHYDPLDFYKI
Ga0352983_1013847	Ga0352983_10138471	F037523	MFGKIQNLQGEYKREHANYFFYKLLLTKRETGNREENLEVTPVQKKMVFRGKTNKKLKAPEDRNVLKMILPSLVRFLDDKFISHKSWALENLKDKWRAERFAKLYKTFTNKTILTPKRDLVDLMKAENLYMNGLGASNCDLFKLLRRYWIRMVCSSLYGPSRVYKTLYLIKMIMMHKAIAYQRFIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGEKGDKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQILLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352983_1016034	Ga0352983_10160341	F094710	IYIACNLYDFCYKLSEYNLPELSVNSKIEIKLRKITKNNDEILIGEMPEILIKKLMENGEKLKSEYDSDYINIGDEVLCRITAVKSKYIYTLINNKLIGRMDIDNYQGNLEKIKKLLKETVGIRKMSVESRGSASSDVTNNYPKELLINADIIDIIKLQNKLNESDLGIKKKKIKKLKIYKIVPHIDFNEINFEDDENTKLNSGLTNEPLSLNLDITGKEVNIGIISEIKPLNKYPIILKVKNNTEENKLQIPFNEIPLNMLKDDGEIKYKLGQKIKFLYTKNKDNDIIQIYSANNNNKK
Ga0352983_1019095	Ga0352983_10190954	F049349	MEEYGCPYCWDMKKNKEKPILFFFDAANNYRECEYCPKCG
Ga0352983_1020603	Ga0352983_10206031	F028678	MQEKLLIKLICLAELDDLADFLWVTLLLDELNKLHDTVGNKLVTDGLVLGEHLAELVKKVDDLLLGVRILDVVLKSINDELADRAAGITVSGRAELDHLTNLLGLHGLDVLDDLLELTVKESRADVGVLGANIAAKLSDELLDLLVGLALIQPVVDELNDGLTGLTLDVISSHGASTNGGENKSDVDELHYDSVNYSQ
Ga0352983_1027880	Ga0352983_10278801	F036516	KVPNLINRIIKKIGVYDKKLEYEGRQLAFNVNLCKVELEDPNKINVSEIQIVEPIPPRIRNFLISGKQIKSISENGDVKEMQLLFSQDLMKVSLKKIKSNLPPKPKYIIDTPTIKKILKGHGTDAFKKSKGFFRSIPKPEVCFSIIGPTTVDGTKAFNIECENEKEVDKWIEYLKVVINYFKKTHTIKG
Ga0352983_1028536	Ga0352983_10285361	F006460	KRFRISQDGNEFAMAIKLLGERVKLECVDAGVPGAPIYCRTYTVDELASESRFFQMVPRSNEAQIELMNIVMSEKVRLYNRGDYMEVTFFLPNGEDLMLQLPRESLKMPMINPNLGQSIQQSVVYDPVTGTSRIQTSVVPTPGVKRSLYDEIRMRPGFGTPFVDSYGDEGFFETGLHSKLTNSTVVATPGGATPAANTSSGCP
Ga0352983_1031039	Ga0352983_10310391	F078088	STRIYCIIILKRLRSQRLEPRGKTRHQISLCDDGADEVVDTALVLATDKTDVTLLTPAVTPGVLDDPVLSASLNTITNKKDTVVHASRRARGVIDTAAVEAPVGGIKSNRERTVGVKSSDHAVLISIDEAPAGEVVLDVALVELASLINTDIRIIVLSNHTNADSIGESIGHETTIAARVANLLGSAREDHAILLAIDELLLRDKRKLLVGKEVGTLHATSGRESPAGTTVGLILDGSDSTLISPVLALRIITETINSKSVLARHLSDGHGTKVLGGELLLSKIGELVKSKAALALTVEVTDKSEVALESVVAGDVLLSAVVDLAVLDGPVNELIIDISGESTADENCNCNKDC
Ga0352983_1034836	Ga0352983_10348362	F049349	MDEYGCAYCWDAKKKKEKEQFYFFDAANNLRQCDYCPKCGRKYGEVPTDE
Ga0352983_1035106	Ga0352983_10351061	F094710	KSEFENESLNIGEEVLCRITSVKQKYIYTLINNKYIGRMDIENYQGNIDKIKKLLKENIGLRKMSVESKGSTGSNNVTNNYPKELLINGEIIDIIKLQNKLSANELGINKKKKIKKLKIYVIVPQIDMKNEIEIEEPNDILNSGLTNESVSSSLDSTGKEPNIGIISIIRPMNKYPIILKIKNYSENKLQIPFNEIPLNMVKDDGELKYKL
Ga0352983_1035124	Ga0352983_10351241	F028678	MVRTTAAGRKANRLAELDDLADLLRITLLLDKLDELHDAVGDKLVTDRLVLGEHLAELVKEVDDLLLGVRILDEVLKSINDELADSAATALLEFSGAELDVLTNLLGLHGLDQLDDLLELTVKESRADVGVLGANIAAELGDKLLDFLLGLTLIQPVVDELDDGLTGLALQVSHGASTDGGKNKSDVDELHF
Ga0352983_1041009	Ga0352983_10410091	F063247	EIDCDPWTGMGRQQNHYEHICKNIVGCEPQPRISASFGCWEWPITYQTKEQQEKTAEFLKDLYNKGLCRYASW
Ga0352983_1081158	Ga0352983_10811581	F037527	EMSCFFKNYMKILIKQNDMVKNHMKDFFKYINLEGKAYTELIDRREELKAKYNAENQRVTAKKEKVYATGDITKFELGTDEKNVDRERILHDKPYAFEHICQNDTANLHKIYNQLGYANKMNMRELKKMIKEYCIRYVDNVKAFDVEFYPSINDLIGTWSNMETFVMSANMPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300032541: Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences