Sample 3300032599

3300032599: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass (Eukaryote Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300032599 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085735 \| Gp0095237 \| Ga0352977
Sample Name	Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass (Eukaryote Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	85353047
Sequencing Scaffolds	34
Novel Protein Genes	36
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1
All Organisms → cellular organisms → Eukaryota	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003062	Metagenome / Metatranscriptome	509	Y
F004661	Metagenome / Metatranscriptome	428	Y
F005942	Metagenome / Metatranscriptome	385	N
F006460	Metagenome / Metatranscriptome	372	N
F006970	Metagenome / Metatranscriptome	361	Y
F012184	Metagenome / Metatranscriptome	282	Y
F014928	Metagenome / Metatranscriptome	259	Y
F019573	Metagenome / Metatranscriptome	229	Y
F028678	Metagenome / Metatranscriptome	190	Y
F030337	Metagenome / Metatranscriptome	185	N
F036516	Metagenome / Metatranscriptome	169	Y
F037523	Metagenome / Metatranscriptome	167	N
F037524	Metagenome / Metatranscriptome	167	Y
F057816	Metagenome / Metatranscriptome	135	Y
F060529	Metagenome / Metatranscriptome	132	Y
F078088	Metagenome / Metatranscriptome	116	Y
F094710	Metagenome / Metatranscriptome	105	N
F094715	Metagenome / Metatranscriptome	105	Y
F096417	Metagenome / Metatranscriptome	104	N
F098413	Metagenome / Metatranscriptome	103	N
F098416	Metagenome / Metatranscriptome	103	Y
F102289	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0352977_1001130	Not Available	662	Open in IMG/M
Ga0352977_1001332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	891	Open in IMG/M
Ga0352977_1003001	Not Available	839	Open in IMG/M
Ga0352977_1003851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	1051	Open in IMG/M
Ga0352977_1006322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	872	Open in IMG/M
Ga0352977_1008135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	1016	Open in IMG/M
Ga0352977_1008786	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum	501	Open in IMG/M
Ga0352977_1009676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	535	Open in IMG/M
Ga0352977_1009693	Not Available	793	Open in IMG/M
Ga0352977_1009797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	904	Open in IMG/M
Ga0352977_1010311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	899	Open in IMG/M
Ga0352977_1011754	Not Available	732	Open in IMG/M
Ga0352977_1012958	Not Available	796	Open in IMG/M
Ga0352977_1013213	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	578	Open in IMG/M
Ga0352977_1016393	Not Available	886	Open in IMG/M
Ga0352977_1019385	Not Available	533	Open in IMG/M
Ga0352977_1024489	Not Available	1147	Open in IMG/M
Ga0352977_1025064	All Organisms → cellular organisms → Eukaryota	522	Open in IMG/M
Ga0352977_1026701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	751	Open in IMG/M
Ga0352977_1028256	Not Available	855	Open in IMG/M
Ga0352977_1028638	Not Available	662	Open in IMG/M
Ga0352977_1032351	All Organisms → cellular organisms → Eukaryota	586	Open in IMG/M
Ga0352977_1032512	Not Available	604	Open in IMG/M
Ga0352977_1040518	Not Available	540	Open in IMG/M
Ga0352977_1050004	Not Available	542	Open in IMG/M
Ga0352977_1051635	All Organisms → cellular organisms → Eukaryota	516	Open in IMG/M
Ga0352977_1056578	Not Available	797	Open in IMG/M
Ga0352977_1072111	Not Available	667	Open in IMG/M
Ga0352977_1075840	Not Available	622	Open in IMG/M
Ga0352977_1087944	Not Available	608	Open in IMG/M
Ga0352977_1100815	Not Available	503	Open in IMG/M
Ga0352977_1104454	Not Available	506	Open in IMG/M
Ga0352977_1123259	Not Available	540	Open in IMG/M
Ga0352977_1142721	All Organisms → cellular organisms → Eukaryota	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0352977_1001130	Ga0352977_10011301	F006970	KIQSDNPLLDKRIVKSTLKTHAYSTPWDQPIYQEKIVSNQKYSKIESVFEIPYLKDAPDYRSGDFFHRFDICVEKKKNLKKTLDDITKRYNDIMAIFNKDLDRIFAGSPSKEDKDRMKELIIKMMGIYHEFREIEHYDDIFKKEVEERKMTFQGDEKEKYEEGMAILSKGFPFQLTIAHQKMNDNFRRSINRFFLEKNMRFYKPAEIDDAKVYKERLMYK
Ga0352977_1001332	Ga0352977_10013321	F037523	RETGNRIESFESGPTPKKISFKGKSAKKIKVPEDRSVTVMVLPSLVRYLDDKFKDTKSWAMDNLVNKWRAEKFAKLVKTLSNKTIVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWVRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFMSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKS
Ga0352977_1003001	Ga0352977_10030011	F096417	TEFTEDLIQISSLLSILLRTTQAIDLFLQNKGNEALCSAIEKFYEYRKFILNCFKMIKEICFSSEENKKKLKECGIEDKIKIAMEKCKPEDKIIKFEGKIAINNITYDKEKEKNKPYTPPNYQEIKSAKLIKSTLYDYITSGITVKGLNPKGKAKEFVLSFSPDLMKIYFHKPKTPLIPPKIKYTLETPITKIVKGHGTDLFKKAGGVFSKPPDKALCFSIIQDKLENEKKERSLNVICSNDKECEKIFGAIELGIYFAKTKCGKAKRGEFNEQNSYLA
Ga0352977_1003851	Ga0352977_10038511	F037523	LQNLQEEYKKNHANYFFYKLLLSKRETSNKEDSLEVIPKQKRMVFRGKTTKRLKVPEDRNVLKMILPSLVRFLDDKFLEHKQWAMDSLLNKWRAEKFAKLYKIFSNKTINPPKRDLVDLMKAEYLYMNGLGASNCDLFKLLRRYWIRMVCSNMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGDKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352977_1006322	Ga0352977_10063221	F037523	VTPKQKRLTFKGKSNRRLKAPEDRSVLKMILPSLVRFLDDKFSEQKRWALENLTSKHNAEKFAKLFKIFSNKTVNPPKRDLVDLMKAEYLYMNGLGASNCDLFKLLRRYWIRMVCQSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGEKGDKNASVVKEFERLATRMGVFTNEDYNNPNEENFCEKINKRYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRI
Ga0352977_1008135	Ga0352977_10081351	F037523	NMFGKIQNLQGEYKREHANYFFYKLLLTKRETGNREENLEVTPVQKKMVFRGKTNKKLKAPEDRNVLKMILPSLVRFLDDKFISHKSWALENLKDKWRAERFAKLYKTFTNKTILTPKRDLVDLMKAENLYMNGLGASNCDLFKLLRRYWIRMVCSSLYGPSRVYKTLYLIKMIMMHKAIAYQRFIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGEKGDKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQILLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352977_1008786	Ga0352977_10087861	F019573	VPQEQFGQSSVQAEPLNLGPNIFPAQPGQLPPEAYQSQTPTVRTLPPKVVKNTLPPQYKTNTLPPKVVTTRLQPIYPPGGAQPSVPQF
Ga0352977_1009676	Ga0352977_10096761	F030337	ILYLIKMVMMHKTIAYQRFIRELVRKWRFSAFIQSISRKKLELMYKNLHVSYLQMANELFGEKSTKNASVVKEFERLVTKMGIFTNEDYNSVNEENFCEKITKKYVFQPMPLLLEKEGPTQFFASGIEIEDSGENNEDYYVDQELGGETIGKYKQETNKSSSKADKNSSRLSKY
Ga0352977_1009693	Ga0352977_10096931	F094710	FCYKTSNYNLPELSVGQKIKIKIKKMKKNESEVILGEMPDVLINKLIDNGNKLKSEFENESLNIGEEVLCRITSVKQKYIYTLINNKYIGRMDIENYQGNIDKIKKLLKENIGLRKMSVESKGSTGSNNVTNNYPKELLINGEIIDIIKLQNKLSANELGINKKKKIKKLKIYVIVPQIDMKNEIEIEEPNDILNSGLTNESVSSSLDSTGKEPNIGIISIIRPMNKYPIILKIKNYSENKLQIPFNEIPLNMVKDDGELKYKL
Ga0352977_1009797	Ga0352977_10097971	F037523	LFYKLLLTKRETGNRIESFELSPTKNKLSFKGKSAKRIKAPEDKSVTGMILPSLVRYLDEKFIGVKAWAMNNLINKWRAEKFAKMYKIFSNKITVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCERINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYK
Ga0352977_1010311	Ga0352977_10103111	F037523	DEYKRNHANYLFYKLLLTKRETGNRIESFESGVTPKKISFKGKSAKRIKAPEDRSVTVMILPSLVNYLDEKFNNVKAWAMENLINKWKAEKFAQMLKNFSNKSTVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMVMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQ
Ga0352977_1011754	Ga0352977_10117541	F004661	QLIIYAVPRPENIVQKTSEVVLEAKERPQNIVQNIHEIVLEAKERPENVFEQRDAIEILGMEKEPLQLQPINQLIIEAVPRPENEPQKTSEVLLEAKLRPENLVQRSGELEIAAQERPENVLEQRDAIEILGMEKEPLQLQAINQLIIYAVPRPENIVQKTSEVVLEAKERPQNIVQNINEIVLEAKERPENVLEQRDAIEILGMEKEPLQLQAINQLIIYAVPRPENIVQKTSEVVLEAKER
Ga0352977_1012958	Ga0352977_10129581	F094710	QKNNNSIIIGEIPDILIKKLIENGEKIKSEFDSFSINIGDEVLCRITSVKSKFIYTLINNKLIGRMDIENYQGNVEKIQKLIKETVGIRKMSVESRGSTNSDVTNNYPKELLIKAEVIDIIKLQNKLNDSELGIKKKKIKKLKIYKIVPQIDFNSIDIDSDENIKINSGLTNEPVSSNLDITGKEPNIGIISSIKPLNKYPILLKIKANLEEKLQIPFNEIPLNMLSDDGEIKYKLGQKIKFLYDKKNNSCKIFNNNINDKEEIK
Ga0352977_1013213	Ga0352977_10132132	F060529	RTGSGSDRFPTGPNSNFEFEFKKMKNSQKIPKNISRCDESNGVKFSQKFVHLVWFAEFIS
Ga0352977_1014029	Ga0352977_10140291	F098413	ESLGPNIFPAQPGQLPPEAYQSQTPTVRTLPPKIVKNTLPPQYKTNTLPPKVVTTRLQPIFPPGTAPQAF
Ga0352977_1016393	Ga0352977_10163931	F036516	YKMLNILAKEDDNKPKISDELMENLIPVVDEKGYNEEGKDVVKLLDSLVLNKKCVPPFVQYKGIDSCVNLFDKNDSNIELIPILLSLFKSVADTSDEYKKMLKEKKLIDLINRAIKKIGMYDKKIEFDGRQLIFSINLAKIDLEDPNSIGVEDIKIVEPIPAEVRNFLTSGRQVKIINDHGDVKQMQLIFSSDLMKVSAKKVKSTLPPKPKYIIETHTIKKILKGHGTNAFKKSKGLFRKIPPPEVCFSIIGPTTVDGVKALNVECESEKDVDKWLKYLSVVINYFKKTHTIKGA
Ga0352977_1019385	Ga0352977_10193851	F006460	EPKRFRICQDGREYAMAIKLLGERVKLECVDSSVPGAPIYCRTYTVDELASESRFFQMVPRSNEAQIELMNVVMSEKVRLYNRGDYIEVTFFLPNGEDLMLQLPRESLKMPMINPNLGQSIQQSVVYDPQTGTSRVQTSVVSTPGLKRSLYDEIKMRPGFGQPFVDSYGDEGFFETG
Ga0352977_1024489	Ga0352977_10244891	F078088	MRLRHQIHLCADGADEVVDTALVLATDETDEALLTPAWTPGVLDDPVLSATLLTITNKKNTVVHASGRAGRVIDTAAVEAPVGGIKSNRERAVGVEGSNHGVLVVIDEAPLGEVILDLALVELASLVNTDIRIVVLRDHTDTDSIGESIGHETTVATLITDLLSGARIDHAVLLAIDELLLRDKRKLLVGKEVGTLHAASGREGPAGTTVGLILNLGDGTVVDPVLGGRIVSEAIIGKSVLAGHLTDGHDTKILGSELLLGKISELVKSELTLALTVEVTDKSNIALEDLIAVHVLLSRAVDLAVADGPVNELVVDLSGESAGEEKSNNIDSLHYDS
Ga0352977_1025064	Ga0352977_10250641	F014928	PVITEQIQPVVHKEIQPIVHQNIQPVITKQIQPVITEQIQPVIHKEIQPVVHQNIQPVITKQIQPVITEQIQPVIHKEVQPIVHQNIQPIITKQIQPVINKQIQPVIHKEIQPVINQQIQPVITTEVQPVINKRIQPVIHKEVQPIIHQEIQPVITTEVQPVINKRIQPVIHKE
Ga0352977_1026701	Ga0352977_10267011	F037523	SFRGKTNKKLKAPEDRSVIKMILPSLVRFLDDKFVDNKHWAMDNLLAKYKAEKFSKLFKVFSNKTVSPPKRDLVDLMKAEYLYMNGLGASNCDLFKLLRRYWIRMVCSSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKAEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFCSGIEVED
Ga0352977_1028256	Ga0352977_10282561	F057816	TKLEGSYQLLNGMFSASPALKDKYELKFRHKGKQVSFDVIAKDGKLIQALMGLGINLSEYHKFNFALKSGINLAEILNPAADQTANLVKICSLLFSIKSETENVRYLSGALAEALKDVKLNDETIQAKFNKVVGYLNFINSFIGAKLKLEYDAKVLAGEGAKEAEKKAGGAEDLKTKISGAQAMAMGVGSSMVAPMISSAGMTDTVKALDLDSFSISIGVPQYENGYAISIKIPGLSQVLGGMLDAPAQPPK
Ga0352977_1028638	Ga0352977_10286381	F004661	VLEQRDAIEILGMEKDELQLQPINQLFIAAIPKPENEVQKSGELEIAGLERPENIVQRTGELVIEKIPRPENILEQRDAIEILGMEKDELQLQPINQLFIAAIPKPENEVQKSGELEIAGLERPENFVQKTGELEIAALERPENVFEQRDAIEILGMEKEPLQLQPINQLFIAAIPKPENEVQKSGELEIAGLERPENFVQKTGELEIAGLERPENVFEQ
Ga0352977_1032351	Ga0352977_10323511	F102289	GIGVAGALGSVHELISKTLSDGLNVAESRVTNTLGEKVERLVDTTKRRNINSLTLDGTTSAHTSGILTDAGVDNSINENLDGVLVSHESDDLESVLHDADSKKLLATVATVEHETVNKTLDDGALALTETNLVVTTSRVGEVHTELVLLVNCDVILKRDIAHLDILISPLVEKTLLEFRNNCHLPIYISN
Ga0352977_1032512	Ga0352977_10325121	F028678	RPSQKGGKRLAQLDDLADLLRVTLLLDELNKLHDAVGHELIADSLVLGEHGAETIKKVDDLLLGVRILDVVLKSINDELADGASGTITKGGVAEFHKLANFLRLHGLDVLDDLLELTVKESRADVGVLGANIAAKLSDELLDLLVGLALIQPVVDELNDGLTGLTLDVISSHGASTNGGENKSDVDELHYDSVNYSQHNE
Ga0352977_1040518	Ga0352977_10405181	F004661	PENFVQRAGELEIAGLERPENLVQHTGEIVLEAKDRPENVFEQRDAIEILGMEKEPLQLQPINQLFIAAVPRPENFVQRAGELEIAGLERPENIVQHSGELEIAALERPENVFEQRDAIEILGMEKEPLQLQPINQLFIAAVPRPENFVQHIDEVELVAKDRPENIVQQTNEIVLEARD
Ga0352977_1045342	Ga0352977_10453421	F094715	VDVLHDDGKNISNAGPPGETLVVDKVAGDGGGDDRLLVHVRNTLHGLVKELAADALRDVVDKDVKKLLVLRSXKIKRKKVVTEVIGELVDLLGDKLRDIGHTNLAALLLVVLEHAMSLSVGEVLKTDHDVGSELLLDRDELLV
Ga0352977_1050004	Ga0352977_10500041	F028678	LLWVALLLDELDELHDTVGNELVADRLVLGEHGAETVKKVDDLLLGVRILNVVLKSINDELADSAASLVVSLLAKLHVLANLLGLHGLDQLDDLLELTVKDGRADISVLGANIAAGLGNELLDLIVGLALVEPVVNKADDGLASGALDIIGLGHGASTDGGEDKSDIDKLHYDLFTTRKN
Ga0352977_1051635	Ga0352977_10516351	F014928	REIQPVVHKEIQPIIHKEIQPVITREIQPIITEQIQPVVHKEVQPIIHQEIQPVITTQIQPVINQKIQPVVHKEIQPIIHQNIQPIITKQIQPVIREEIQPVIHKEVQPIIHQNIQPVITTQVQPVINEQIQPVIHKEVQPIIHQNIQPVITTQIQPVINEQIQPVIHKEI
Ga0352977_1056578	Ga0352977_10565782	F012184	MNINEVKNVIMGIEGATMARANKTNFIVIPTDEGCVKVAVQTALAKDTKNHVAFNMEAAVAEYKAWEAETALKAAERAAKPKVVKGPNPDAQARRDELDAKIAALPSFTEYTATDIHNALAGQIPENVLVMQIGSSAKRLVAAGILTTSTREGDKKTYYS
Ga0352977_1072111	Ga0352977_10721111	F006460	EPKRFRISQDGQEYAMAIKLLGERVKLECVDASVPGAPIYCRTYTVDELANESRFFQMIPRSNEAQIELMNVVMNEKIRLYNRGDYMEVTFFLPNGEDLMVQLPRESLKIPMINANLGQSIQQSVVYDPVTGQSRIQASVVQNPGLKRSLYDEIRQRPGFGVPFVDSYGDEGFFDSGLPSKFSTVGATNLGASIPSVGQSGVVLNQSGLPVTSSALGNTQL
Ga0352977_1075840	Ga0352977_10758401	F012184	MFQEEPHKYFVQLTVCRKLQNRVSKGGNMTKNEVLSTILGLEGATMCRQNKTNFVAIPTEDGFVKVAVSVALAEKTANHQPFNFEAAKADYKAWEAEAALRAAERANKPVKVKGPNPEAEARRQALDAQVEGLPSFTDYTATDIMNALAGQLADNVTVMAIGSSAGRLVEKGVLTVEVRKDEKNPKGKKFYTKA
Ga0352977_1087944	Ga0352977_10879441	F003062	GVGEYDINEAELKLKKKTGISTNKAKRQDPFEVNKEKKLVPGIGSYNAKKLDVKGIYIREKDSAPRFPSAYNGRPGVGEYDINDAELKLKKKTGISTNKSKRKDPFEVGKERKNVPGAGAYNTINYNKNKFYIESDIPRFNNSNNGKPGVGEYDINDAELKLKKKTGIASFKSKRNDPFEVGKDKKLVPGAGSYNINKTDIK
Ga0352977_1100815	Ga0352977_11008151	F098416	ANFAKICSLIFSIKSETDNVRYLSGALAEALKDVKLADENIQKKFDKFVGYLNFINSFIGAKLNLEYDAKVLAGEGAKEAEKMNGGAEGLKTKISGTQQMAMGMGQNMVAPMIGQFGMTDTVKALDLDTISISLGVPKYQNGCAISLKIPGLSQVLGGMLDAAPQMP
Ga0352977_1104454	Ga0352977_11044541	F037524	GVMLALVSSHLATAARHGSIKKRARTMAATTTAAHDLKKIARRSSLAEGLDLLEGFRRKTITYNRSDSMRILLRVLYTNGSNSRSHTSDDRIHTRFSATHIRINRIIREIGLEGDITRAEDGVEVLEGKNVVDLFLTKTLSKLGNARTNKDGLAARITLLADLTDVVH
Ga0352977_1123259	Ga0352977_11232591	F028678	RLAELDDLADLLGVTLLLDELNELHDTVGNELVADGLVLGEHLAELVKKVDDLLLGVRILDEVLKSINDELADRALGVTKRLVAKLHVLTNLLGLHGLDQLDNLLELTVEESSADISVLGANIAADLGDELLDLIVGLALIEPVVDEGDDSLTGSALKGISHGAGTDGGENKSDVDELH
Ga0352977_1142721	Ga0352977_11427211	F005942	NSPPEISEEVYKALKEDLDAITKKKAINPHEIQKGLREINFHKELPDIYKIIDDMCLEYDLQGKEMTSDEILSYITEKLSDNRTRKGLNNIFDSLKDQKVGEITPEVLAKIAAEVGDELTEDDMKKILQTISGPSPSININQDEFYYIMTKKPEDAFKINMATKKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300032599: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass (Eukaryote Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences