Sample 3300033527

Basic Information
IMG/M Taxon OID	3300033527 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0135940 \| Gp0344171 \| Ga0316586
Sample Name	Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	194824088
Sequencing Scaffolds	52
Novel Protein Genes	57
Associated Families	42

Dataset Contents

Total Genome Size

194824088

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1
All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1
Not Available	36
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales

All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Ecosystem Assignment (GOLD)

Name

Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Alabama
Coordinates	Lat. (^o)	30.2619	Long. (^o)	-88.2383	Alt. (m)	N/A	Depth (m)	0 to .02
Location on Map

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Location Information

Location

USA: Alabama

Coordinates

Lat. (^o)

30.2619

Long. (^o)

-88.2383

Alt. (m)

N/A

Depth (m)

0 to .02

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000076	Metatranscriptome	2620	Y
F000203	Metagenome / Metatranscriptome	1619	Y
F000241	Metagenome / Metatranscriptome	1481	Y
F000267	Metagenome / Metatranscriptome	1412	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001767	Metagenome / Metatranscriptome	638	Y
F003207	Metagenome / Metatranscriptome	501	Y
F005632	Metagenome / Metatranscriptome	394	Y
F009934	Metagenome / Metatranscriptome	311	Y
F010686	Metagenome / Metatranscriptome	300	Y
F011719	Metagenome / Metatranscriptome	288	Y
F016975	Metagenome / Metatranscriptome	243	Y
F017072	Metagenome / Metatranscriptome	243	Y
F027186	Metagenome / Metatranscriptome	195	Y
F027192	Metagenome / Metatranscriptome	195	Y
F030135	Metagenome / Metatranscriptome	186	Y
F032070	Metagenome / Metatranscriptome	181	Y
F033058	Metagenome / Metatranscriptome	178	Y
F035541	Metagenome / Metatranscriptome	172	Y
F037557	Metatranscriptome	167	Y
F038530	Metagenome / Metatranscriptome	165	Y
F040651	Metatranscriptome	161	Y
F041782	Metatranscriptome	159	Y
F045104	Metagenome / Metatranscriptome	153	Y
F048393	Metagenome / Metatranscriptome	148	Y
F049453	Metagenome / Metatranscriptome	146	Y
F052615	Metagenome / Metatranscriptome	142	Y
F054425	Metagenome / Metatranscriptome	140	Y
F055469	Metagenome / Metatranscriptome	138	Y
F059476	Metagenome / Metatranscriptome	134	Y
F059693	Metagenome / Metatranscriptome	133	Y
F060086	Metagenome / Metatranscriptome	133	Y
F067247	Metagenome / Metatranscriptome	126	Y
F069805	Metagenome / Metatranscriptome	123	Y
F077370	Metatranscriptome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F078768	Metagenome / Metatranscriptome	116	Y
F082866	Metagenome / Metatranscriptome	113	Y
F089490	Metagenome / Metatranscriptome	109	Y
F092940	Metagenome / Metatranscriptome	107	Y
F093160	Metagenome / Metatranscriptome	106	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0316586_1000582	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.1	3619	Open in IMG/M
Ga0316586_1009572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1454	Open in IMG/M
Ga0316586_1010652	All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1397	Open in IMG/M
Ga0316586_1016725	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1178	Open in IMG/M
Ga0316586_1018315	Not Available	1135	Open in IMG/M
Ga0316586_1018720	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
Ga0316586_1021899	Not Available	1059	Open in IMG/M
Ga0316586_1032401	Not Available	900	Open in IMG/M
Ga0316586_1032972	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	893	Open in IMG/M
Ga0316586_1033478	Not Available	887	Open in IMG/M
Ga0316586_1034538	Not Available	875	Open in IMG/M
Ga0316586_1035801	Not Available	862	Open in IMG/M
Ga0316586_1036268	Not Available	857	Open in IMG/M
Ga0316586_1037417	Not Available	846	Open in IMG/M
Ga0316586_1038366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	837	Open in IMG/M
Ga0316586_1038667	All Organisms → cellular organisms → Eukaryota → Sar	834	Open in IMG/M
Ga0316586_1039392	Not Available	828	Open in IMG/M
Ga0316586_1040668	Not Available	816	Open in IMG/M
Ga0316586_1041029	Not Available	813	Open in IMG/M
Ga0316586_1041558	Not Available	809	Open in IMG/M
Ga0316586_1042456	Not Available	802	Open in IMG/M
Ga0316586_1043310	Not Available	795	Open in IMG/M
Ga0316586_1044131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	789	Open in IMG/M
Ga0316586_1044502	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
Ga0316586_1045583	Not Available	778	Open in IMG/M
Ga0316586_1045859	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	776	Open in IMG/M
Ga0316586_1046217	All Organisms → cellular organisms → Eukaryota → Sar	773	Open in IMG/M
Ga0316586_1046579	Not Available	770	Open in IMG/M
Ga0316586_1046611	Not Available	770	Open in IMG/M
Ga0316586_1046731	Not Available	769	Open in IMG/M
Ga0316586_1048409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	758	Open in IMG/M
Ga0316586_1051749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	736	Open in IMG/M
Ga0316586_1052172	Not Available	733	Open in IMG/M
Ga0316586_1059643	Not Available	692	Open in IMG/M
Ga0316586_1061206	Not Available	684	Open in IMG/M
Ga0316586_1063423	Not Available	674	Open in IMG/M
Ga0316586_1065493	Not Available	665	Open in IMG/M
Ga0316586_1065979	Not Available	662	Open in IMG/M
Ga0316586_1071389	Not Available	640	Open in IMG/M
Ga0316586_1072957	All Organisms → cellular organisms → Eukaryota → Sar	634	Open in IMG/M
Ga0316586_1074523	Not Available	628	Open in IMG/M
Ga0316586_1080609	Not Available	607	Open in IMG/M
Ga0316586_1083878	Not Available	597	Open in IMG/M
Ga0316586_1099242	Not Available	555	Open in IMG/M
Ga0316586_1101107	Not Available	551	Open in IMG/M
Ga0316586_1109684	Not Available	533	Open in IMG/M
Ga0316586_1116569	Not Available	519	Open in IMG/M
Ga0316586_1120031	Not Available	512	Open in IMG/M
Ga0316586_1121741	Not Available	509	Open in IMG/M
Ga0316586_1122129	Not Available	508	Open in IMG/M
Ga0316586_1122603	All Organisms → cellular organisms → Eukaryota	508	Open in IMG/M
Ga0316586_1125498	Not Available	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0316586_1000582	Ga0316586_10005821	F032070	MAFSANLAVTGVPDFGIIHIDPIETAKAFQVYLDTASRLTGVSLDDISLRVTSLPTDMSKVTLVDLLSRGMKLFDAVVWLTAKKPASHPLVIDPSYTADQVPSLHNIARAVFYCYFMLLTQARYPVSARADEKPKIPNFLRTIMGMDKEQHHYVETICSFEPAKFDAAWARFVKFDNFGQEVLSRFGLGVAGYRMFGPFGVYDPKPDMPEALAPAFAFARSLATAVPSWDVHPLTRAPMVLKSRGNLNKNLGNLILECFTDAQINEMVTNRLIFKKPEHDANHRQYKTWGSEDNITGTSYIF
Ga0316586_1009572	Ga0316586_10095722	F089490	MYRLMKSERFTLDHLTSGLMSFYRQTQVECFQQFRAALRACEAANNGKSRHYLLNASGQEYYQGTWID
Ga0316586_1010652	Ga0316586_10106522	F082866	MHHQLPNRKRSLSLLLRKASGSGKICVLSQIEPQTPRLVVSLRQYLQVSDLHPYFPQSLKPFGFLGAVSTCAHCLDGSV
Ga0316586_1016725	Ga0316586_10167251	F001767	SANRSKTTGRLFPTPNKPDPMPAELAFLFTKITPEQMMYMWNVLTLIFFTQCAMILAYCAALACFPEHWWACTLTFGVPFAYIAIQHIYIDHDVMHGATFPPYWWQAYLTHPFSDFLSLPWEEFVLEHNRHHASTVDLLQQGEFGWDPEELQYWMLEWTWRHGKKPFPIHPFGLIITGALVPVLHFFGMNDTGGLFAIEWMLSFPDEGAGGKCPKDFYKKWLVRRVKHNAFVWSLWACVWLLGTVPLGRPLSEGWRFVLTVSCCARVGYSAAWIFITNFTHSHPWNKFLANDPARTWPVLHEVMAYVLGGKHRWNEMLFHDVHHAFPNAIGTLSQRGRFHGWRKVHDASVEVLANGIWKPNGDEETEMQQNQRRRSQKMKSGKQAK
Ga0316586_1018315	Ga0316586_10183151	F059693	MKFVSLAVRRSDLGRRETSGSPVMLRGALDSAGCPCGESRMSEPGAREVRVHVVRLGGRYRSDASRVFGTVGLQGRMVTRGR
Ga0316586_1018720	Ga0316586_10187201	F003207	MPDPGRFIAWSKQEQGTLLQQLELLESGKVRTGEDQGDGWVDTTEQSMNRIKKRLAELEELLTEAGSGTASKPGER
Ga0316586_1021899	Ga0316586_10218991	F027186	MVTNSNFNFTNNTIITLELPFSEHIEELRQRIFALFWIILLLTCAA
Ga0316586_1032401	Ga0316586_10324011	F077370	DRKNNRKRILKNNKQQLAVPRPMSILGETIDRAIDILIDIYAVNSIGTPFYSFSPSAGTPNMSVNLTDLMILQFTEYSELTRVYGLSKLKKIQLGFTRASNFIGTGTTILQNTPSLFLQSSTIPYSAGSVTLQRAVAQSDNSVEVDLQTYDPKSWNIMLPPHIVSNNRANNQTFVFGSQTWISTRLNNIQNYPDLFLNLGSLSTPTFDSSAPNQSFLIGQIHGRMQLSFAAPIVG
Ga0316586_1032972	Ga0316586_10329722	F005632	TRYVLDGGFGAFELSPWRAVAARVEYDSEKWNLGIGVDLGFGLRLRAAALNLETLSAGVGWFHEL
Ga0316586_1033478	Ga0316586_10334781	F077370	PMSILGKTVDRAIDILIDIFAVNSIGTPFYSFSTSQSSPSMSVNITDLMILQFTEYSELTRVYGLTKLKKIQLGFTRSSNYVGGGTQILQNTPSFFLQASTIPYSAGSITLQRAVAQSDNSIEIDLQTYEPKAFNIMLPPHVVSNNRANNQTFVFGSQTWVSTRLNNIQNFPDLFLNLGSLATPTFDTQASNASYLIGQIHGRMQLSFAGPIVG
Ga0316586_1034538	Ga0316586_10345381	F035541	VKRLALLFTLAILATFVIAPALYAKANTTDLNNIPITDTLEAGTFEWDVTGRYNEDFARGRRVSTRLFGALFEDFEFGMSWGISRMAGPLEVALKYKVLDEYEGRFPVSLAVGAEGITGNYQRTGYDPTYYGVIGVHDVHLGGWWDWYVGFANNPTGFDDEDNSVFGGFKYWIDDDLQFNADYWGYSDNEEYLIAGGLNYDWVNHLGVQGWVEQDSVTEDTVVVLQFVARADMRDLHAMVSDPE
Ga0316586_1035801	Ga0316586_10358011	F035541	VKRLALIFTLAILAVLFAAPAVFAYADTTDLNNIPTTDTLEVGTFEWDVTGRYNEDFARGRRVSTRLFGSLFENFEFGMNWGVSRMAGPVELALKYKVLDEYEGRFPVSLAVGAEGITGNADRTGYDPSFYGVIGVHDVHLGGWWDWFVGFANNPTGYDDEDNSVFGGFKYWIDEDLQVNVDYWGYADNEEYVIAGGVNYDWINHIGFQGWVEQDSVTEDTVVVLQFVARADMRDLHAMVSDPE
Ga0316586_1036268	Ga0316586_10362681	F035541	VKRLALLFTLAILATFVIAPAVFAKANTTDLNNIPITDTLEQGTFEWDVTGRYNEDFPRGRRVGTRLFGSLFENFEFGMSWGVSRMAGPLEVALKYKVLDEYEGRFPVSLAVGAEGITGNYQRTGYDPTYYGVVGIHDVHLGGWWDWYVGFANNPTGYDDEDNSVFGGFKYWIDEDLQVNADYWGYSDNEEYVIAGGVNYDWVNHLGVQGWVEQDSVNEDTVVVLQFVARADMRDLHAMVSDPE
Ga0316586_1037417	Ga0316586_10374171	F078768	KELRWSAVVNKLLSNVSRIIPGDWGKVEPGWLARPL
Ga0316586_1038366	Ga0316586_10383662	F027192	MKRFMFVLALLLVVGLTAAWAQSEAVALINAEVESELIVTNLDADWGLFSPGQTYTITPGAFKEPPGPGESAGDQVESAGFEIEGNPNSEILASLVLPAAFVSEDQNGNMPLSNWTYGWNYDDDPSVAFQAAGPVVGSAVALSIGGDAIVGLFLGADVTVPTTAYTGTYIAQVICSATYTGN
Ga0316586_1038667	Ga0316586_10386671	F037557	MTVSEPLLPGPPGGKSKLHTKASILYGADEYLEQLAKKYEEYDELATLLQAAPDAAHVHDEGAKQAARQDGGGKMLQLDVDAEKRSKTTKRAIPTPNIPDPMPAELAFMFTKISPEQKMYMWNIYTLIFAAECLDVVLYWALLRYGPALGVSFAWATGIFGTIMVSLCIQNVYILHDVVHGATFPPYEWQNYITHPLSDFISLPWMDMIMEHNRHHNSTFDLLNHGEFGWDPANWLYTLQEWTFEWYGWLTVPLIPFWHFIGANDTGGLFALLWWSQ
Ga0316586_1039392	Ga0316586_10393921	F033058	VVKTRNSRHRRVLTWFASRWRNHQPKRAEKPHSKSRSRKALDGPATRPETPLAVENSVGKLAAPPREAPNASMGKRAWRTPIPHLVP
Ga0316586_1040668	Ga0316586_10406681	F009934	VLDGPAMRPATPLAEENSVGKLAACKAPNASMGKRAWRTPTPKIR
Ga0316586_1041029	Ga0316586_10410291	F049453	MRPKTPVAAVNGVGKLAASLEAPNVSAGKRAWRTPIP
Ga0316586_1041558	Ga0316586_10415581	F011719	EIEGNDEKLRPEVSKIIPGDWGKAESGWLAWPLSSRIARFGSGGRIHQFLWRCSRAVSYAKPGTWRPGAIRSRSKSSQVTQVGFGLERIAVTQRVSGCYCESARTGGSGVSASCGIGLKKDAERRDKKERPHREGHTV
Ga0316586_1041583	Ga0316586_10415831	F000203	RGMGVRQALFPVPTLGAELAAGFPTLFSTASGVSGLVAGPSSALPPLDFE
Ga0316586_1042456	Ga0316586_10424561	F001024	MRPITPLAVENGVGKLAAPKRRLMSAREREPGELP
Ga0316586_1043310	Ga0316586_10433101	F052615	VARGQRTANSGGRPPAKRARREIEITGVSCLGPQAGDANVRPSGLKSLTQQSGDREAPDGPATRPTTPLAVENSVGKPAAHEAPNAGTGKESVANS
Ga0316586_1044131	Ga0316586_10441312	F038530	MRPRASLAAVSSVGKHTARESEAPNAVRMGKSAWR
Ga0316586_1044502	Ga0316586_10445021	F059476	HPRFPGQVRMAQQRNTERSGTRKTITIVVLVLIALGFFVASFFALTK
Ga0316586_1045583	Ga0316586_10455831	F017072	MRDLAASSDKKPLRVESSSSGWFRAWANRSHPEGEQLLLCISTMQAALAGLIENKDQGPPKEKRRKADKKSASIGKQHGNSAGSVKNFRAPAMLKTAPLDCEIKRNLREKRRDPWPRANAPSKAVADPELVVKTRQ
Ga0316586_1045859	Ga0316586_10458591	F041782	DFISLPWMDMIMEHNRHHNSTFDLLNHGEFGWDPANWLYTLQEWTFEWYGWLTVPLLPFWHFIGANDTGGLFALLWWSQFPDAGAGGKCDKSFYTKWLPVRVKHVLFVWSLWACIWLLGSYGLDRPLAEGWRFVLWVSCFLRIGFALAWMFIANFNHSHWWNEFLAGDPDRTWPKLHATMAFLLGGRHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWEKVHDACVEILSRGLWISEDAETVMDKHQKKRSMVLKSRK
Ga0316586_1046217	Ga0316586_10462171	F040651	TKRETDDERVIAVKEGPLRMEFFHRHVSDGYRSFWQAPLDSVKQMVQELVDYAAKTEGKGGVVGLGIRSEEIKGVSHDSLWRSMTESIREPARFFACSDVSLKECKGFVQRTITANGETYLENIYYDEPSCEIVYRKLVNGSETDVERVVALRTHPLQLEFHQRNAADGFRVQWDMPKSAPLASVEAFVREARRKDGAQPTTVSYGITSDPIREVSYDSLFAAVGLSIKEPWRVIDVDQAGCSVEDCDGYTLRKMKH
Ga0316586_1046579	Ga0316586_10465791	F030135	SPRAQNREELAILSSVTDIWHTTLVGRQFPDAILPGTEAFDLVAGPLN
Ga0316586_1046611	Ga0316586_10466111	F001024	MTPLAVENGVGKPAAPLRRERLMLARERELGALPS
Ga0316586_1046731	Ga0316586_10467311	F030135	SEGLKDREELATLSSFTDIWHSTKAGRQFPDAILPGKEAIDLVAGPLN
Ga0316586_1048034	Ga0316586_10480342	F054425	GCRLPDAILHGKRSYRPRSRAVQNLAASGLLSEAFQLDSASGCATGLRTRLRHVCDTLPPLNHLTPGQPPLLTVRLPGVTGLASYLSGHLSLTVQRCLF
Ga0316586_1048409	Ga0316586_10484091	F067247	VRKLLSIGIILALLVTFIVPVAVAAQDDCCEWTPPASVPMPDRTTKTLAGASMWTLLGVTDIMGKAVCATTGQLAANLGGWSDELGVIGVDVTVAALDGIGPLLEYVMGEFLGMADLGASLADLIGGIADALAGAAEA
Ga0316586_1051749	Ga0316586_10517491	F067247	VRKLLSIGIVLALLVTFIVPVVVAAQDECCEWTPPTCAPMPDRTTKTLAGATMWTLLGVTDIMGKAVCATTGQMACNLGGWSDELGVIGVDITVAALKGIGPLIEGVIGQFLPDFADLAGGVVDLLDGIADALAGAAEA
Ga0316586_1052172	Ga0316586_10521721	F035541	VKRLALIFTLAILASLIAIPAAFAGNTSFGNTTSLNNIPITDTLEEGTFEWDAYARYAEDFPRGHRIATRVFGALFKNFEFGMSWGISRRAGPVELALKYKVLDEYGGRFPLSLAVGAEGITGNYDRTNMDPTYYGVIGIHDVHLGGWWDWYVGFANNPTGFDNEDNSLFGGFKYWFSDCVQVNADYMGYSDNEEYIITGGLNYDWMNHIGFSG
Ga0316586_1059643	Ga0316586_10596431	F035541	TNLNNIPITDTLEEGTFEWDVWAAYNEDFYRGRTIGNRLFGCLYDNLEFGMTWGISRPAGPLELALKYKVLDEYEGRFPISLAVGVEGITGNSTRTGMDPTVYGVIGIHDVHFIGHWWDWYVGVNHNPTGFDTEDNSIFGGFKYWINDDFQFNADYWGYGDNENYVLSGGFNYDWVNHIGFQGWVERDSVTEDSVFVLEMAVRADMRDLTAEVSDPE
Ga0316586_1060040	Ga0316586_10600401	F069805	TEDLNGEYPNVVSVRGIVEAENRASYSCSGSLLHIDNNKIVILTAAHCTDGWKALIAAGVLDSVGVSFDQNNVVNGSISDATYYVRGGVPISFPAKDAPFEKFDYGMVVFSTNAVNSIGETVSDRWGGIPGALTPVQYSPDKSYLSELIKNNRTTRDSLSFTAVGYGTGEKFPIPGEETGPANPAGVNYDTFPIRYIADSLSYNAHNPVNDVLRLSMNIAKDENGTCNG
Ga0316586_1061206	Ga0316586_10612062	F000344	MRPKSAHAALSGVGEHPARESESAKWCANGKERVANAHP
Ga0316586_1063423	Ga0316586_10634231	F077370	RNTQRKEQRNRRLNRKRVLKNNAHQLAIPKPMSLLGATIDRAIDILVDIHAVNSIGTPFYSFSTNQGAPTMTTNITDSMILQFPEYSELARIYGLCKLKKIQLGFTRSSNYVGGGTTILQNTPSLFLQASTIPYTSGSITLQRAIAQADNSVEIDLQTYEPKAFNIMLPPHVVSNNRAQNQTFVFGSQTWISTKLNNIQNFPDLFLNLGSLATPSFDSQASNNS
Ga0316586_1065493	Ga0316586_10654932	F048393	MSLHRFRVVMAVLASISVCLLMAAAPAIADKGLGAYKMEGAWVAKVVGFPGQWSYVLTPDSSGRRASGHGSVDVGFDPAAVGCDLGESNAASPILSNVKMTGPDTFVVYSVWYGLMGPQTSQREIAYIGEVRSEYNVLAPGKTSGTHYFYFYLPSQDVDPADGFPDEGEAPACSLPFPFYTLDTRVPAP
Ga0316586_1065979	Ga0316586_10659791	F060086	IFIIVNNYTRATAGQEDPFELDSNLLLLSIWYGEDSKRQNFFKIDHETPLLTDLADLLY
Ga0316586_1069640	Ga0316586_10696401	F000241	LGRVFVGSPAPGAARGQRLVARVSADYLERQGPKDSDVPFTASAATGPTYAVEFKKRPFGILRYQPGQGMKGAMAMEVIPKSRYPGDPQGQAFSSGVKGGFVVKSINGQDMLNEDFGKIMDLLDDEVADPRFSKSTQLALEKQGGRLAEAAEPPLAITFAEIPGYVYKGAELVADGQEGY
Ga0316586_1071389	Ga0316586_10713891	F077370	YNTNKQSRRNRKKLLKNNSQQLAVPRPMSILGETIDRAIDILVNVYAVNSIGTPFYSFGTATGIPSMSENITNDMILQFSEYAELSQIYGLVKLKKIQLGFTRASNFIGSANNVLENTPSFFLQTSTIPYTTGSVTLQNKVAQSDNSVEVDLQTFEPKAWNIMMPPSIVSNNRANNQTFVFGAQVWVSTKLNNVQNFPDLFLNLGSLAQPTF
Ga0316586_1072957	Ga0316586_10729571	F000267	NDKEKTKSIADAQTKIEGLTTKIEELTASSSRLSAEIDNLGKEVAKNQEALSTATAIREKELAEFNAEEKDLLESIRALKAAITVLSKHHGGALVQMPRTHLLGVAAAVGHEMQKHASLLQGVLTPSERRLVEAFSQQPQDYFDASPTFRQSYAPQSGEIFGILKQMLETFESNLSASQKEELAAQKAYEELKAAKEAEIEAGQTQKERKM
Ga0316586_1074523	Ga0316586_10745231	F016975	VSPPGPQAGGATTSPSGPSGLTQQSTSRKAMDGPAMRPTTPYAAENGVG
Ga0316586_1080609	Ga0316586_10806091	F010686	VTKGTWGMSRCQKAMKGVEVCEMFGGVDKRAVIPKFPN
Ga0316586_1083878	Ga0316586_10838781	F055469	DIKMLKRTVVILAAAAFFWGTVPTQTAQAGDDMWDLMDPSWWADKIFDDDDDDWWYYRHHGYSPYWGAPYAQHPRVIVIQPPETVAQNPETRPPPE
Ga0316586_1095850	Ga0316586_10958501	F000076	HDWLPVLLPPPLAAAASKKMAEEEGQEVIFTENTAPDREIWDEKGGLIKKGAAEIAERDQDHVPEVKVLTTLGMFAVPVTAETTIGEIRQKVQEWKPEYSLEQIELVCKDKDAWGPLFNKTSRPRDDDETVESLWSDWDIPRRMMQVALWIKEKNEETGEWESTFWKMLEESKCDDWSFQGHTI
Ga0316586_1099242	Ga0316586_10992421	F092940	MKVKGLAFLAAAVLLLGISSVAYAITWGREDLNGEYPNVVSVRGVVEATNTARYSCSGSLLNIDADKVVILTAAHCTDSWIAAIGAGILNTVGVSFDQNNVINGSFSDATHYVRGGVPISFPAKDAPFEKFDYGLVVFAKTDVNFD
Ga0316586_1101107	Ga0316586_11011071	F077370	RKRILKNNSQQLAVPRPMSILGKTVDRAIDILIDIFAVNSIGTPFYSFSTSQSSPSMSVNITDLMILQFTEYSELTRVYGLTKLKKIQLGFTRSSNYVGGGTQILQNTPSFFLQASTIPYSAGSITLQRAVAQSDNSIEIDLQTYEPKAFNIMLPPHVVSNNRANNQTFVFGSQTWVSTRLNN
Ga0316586_1109684	Ga0316586_11096841	F045104	LSLANTALACTTLLDWLAEHNAQLVIPDTLLRAPSLNPTRQSAVVVWIAPSALLEAIRFATGLTTRAPRQTAALLARWPSAPALRPFLRRLNTARPADQLSLL
Ga0316586_1116569	Ga0316586_11165691	F078289	MKKTVMILISLFIIFPLCGFNSLVSHEDIPKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQSGLTNDDIMSAIKSDLYRPEKESTSMKEAELVAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTRQYANESQRTPYPTAGATFPKPDNYGYDPLN
Ga0316586_1120031	Ga0316586_11200311	F093160	RENLQMWLWPETSKCHTIDDEAEEADKMAVDPAGNVYIIDDRYRVAKIDGATDTVFDVLAIPGYDCEETVPDDTPVVFRNTANNIAYMPLGQGKLYVTSEQNTISLIVLDKKKGTMIIDATLTIPGAAELDAITTDPALNQVYITDESLAALWILKGACANGVGVHCVLS
Ga0316586_1121741	Ga0316586_11217411	F093160	PELSACHGINDEAEEADKMAVDPKGNVYIIDDQYRVAKIDGKTDKVVEVIDIPGFDCEATVPDDTPVVFRNTANNIAYMPLGQGKLYVVSEQNTVTLIQWKKAGKKASATLTTITIPGAVELDAITTDPALNQVYITDEGEPALWILKGACANGVGKQCVQ
Ga0316586_1122129	Ga0316586_11221292	F093160	DGNVYIIDDRYRVAKIDGETDAVVEVIAIPGFDCEITLPDDSPDVLRNTANNIGYMPLGQGKLYVVSEQNTVTLIQWKVTRKKVSTTLTTITVPGAVELDAITTDPALNQVYITDESLSSLWILKGACANGVGKSCVP
Ga0316586_1122603	Ga0316586_11226031	F060086	LKKHSTAGQEEHFELDSNLLLSSGRHGEDCKRQYYLFTFNIDHETPLLIDLADLLY
Ga0316586_1125498	Ga0316586_11254981	F055469	DIKMLKRTVVILAAAAFFWGAVPTQTAQARDDIWDLMNPSWWADQIFDDDHDDWWYYRHHAYSPYLGAPYVQRPRVIVIQPPETLAQNPETRAPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033527: Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences