NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033985

3300033985: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3



Overview

Basic Information
IMG/M Taxon OID3300033985 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0324325 | Ga0310135
Sample NameFracking water microbial communities from deep shales in Oklahoma, United States - M1-7-3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size156479708
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)N/ADepth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F029285Metagenome / Metatranscriptome189Y
F038199Metagenome166Y
F063614Metagenome / Metatranscriptome129Y
F066897Metagenome / Metatranscriptome126Y
F077200Metagenome / Metatranscriptome117N
F082560Metagenome113N
F087072Metagenome / Metatranscriptome110Y
F088079Metagenome / Metatranscriptome109N
F091897Metagenome / Metatranscriptome107Y
F099151Metagenome / Metatranscriptome103N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310135_000614Not Available23694Open in IMG/M
Ga0310135_000964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes16619Open in IMG/M
Ga0310135_002463All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales7770Open in IMG/M
Ga0310135_002858All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Dysgonomonadaceae → Proteiniphilum6919Open in IMG/M
Ga0310135_002961All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales6725Open in IMG/M
Ga0310135_004283All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales5018Open in IMG/M
Ga0310135_004361All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales4933Open in IMG/M
Ga0310135_008050All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3046Open in IMG/M
Ga0310135_017229All Organisms → Viruses → Predicted Viral1564Open in IMG/M
Ga0310135_017773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer1521Open in IMG/M
Ga0310135_020367All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1346Open in IMG/M
Ga0310135_022486Not Available1226Open in IMG/M
Ga0310135_029625Not Available941Open in IMG/M
Ga0310135_032700All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes853Open in IMG/M
Ga0310135_035792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium782Open in IMG/M
Ga0310135_043384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium646Open in IMG/M
Ga0310135_048698All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes578Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310135_000614Ga0310135_000614_2076_2393F066897MSSKWFWLILIAVILFSAIFLWYNHTSTQKALIKAQETIEETKQALRENQDALQKIDEITQKLQDVTRMAKKAGDKRVEEIKYISDDDFLNIANEYSALMVERVE
Ga0310135_000614Ga0310135_000614_2390_2623F103496MPFNDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSSYEHKIDTTAGRKVNS
Ga0310135_000614Ga0310135_000614_451_789F082560VSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCIRGHTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAKGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEG
Ga0310135_000964Ga0310135_000964_1778_2182F099151MRFREETFKENGQIIKKYYIDDKEVSQDVYYSLTDELYENTKLKQEEHTEEICDCEECQYYIDLIHAIKESDYSEALEILRQEIEFRVQEAYMEGQHVLANELGNSLLKHAVKLEDELENLYENGSFDEYNEDG
Ga0310135_002463Ga0310135_002463_43_303F088079MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVFSTK
Ga0310135_002858Ga0310135_002858_59_319F088079MLTEKAILPENVPFRNIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDIFIHICEIYKVDITFFKSNVVSTK
Ga0310135_002961Ga0310135_002961_6413_6673F088079MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSILGNLEPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310135_004283Ga0310135_004283_1768_1941F091897MIGSSMNSFPNTQYQCCKCGKNLGNKYSRLKGKKQPDVNIINGKQYCNKCADKHWND
Ga0310135_004361Ga0310135_004361_83_436F022008MTVSEIEMLREALADLSKQVQALSEDNRTSFGRIYDRLTKIETQMSERECQFKKFEKILDNHETRIRTVEGELRTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILGD
Ga0310135_008050Ga0310135_008050_1882_2142F088079MLTEKAIWLEKVPFRNVDGAIGGQNCPVYFVESMIVGQSCTFCTSRLGKLATNPYRMLTRLDVFIHICEIYKVDITFIKSNMVSTK
Ga0310135_017229Ga0310135_017229_288_518F087072MRWSMKSRVFTKRMFSLELSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIESK
Ga0310135_017773Ga0310135_017773_346_603F038199MMQYTQAEFLQIIKQYNSTDRKIIKANLKHIMDIYGIKPADIIALGYSSRNVYAWTNRSTSNIPLFEQALNIAVKFNFSITEFLK
Ga0310135_020367Ga0310135_020367_450_710F088079MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMIVGQNCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFIKSNMVSTK
Ga0310135_022486Ga0310135_022486_152_379F029285MAKANIMKNNVDYSKYECPYSHLGKESGHELNGPDGYQDIYSVWCTCGFRGPVFYLDPNELGLKLKKETDITTCK
Ga0310135_029625Ga0310135_029625_309_941F077200MMNKFTVIDVKTQPNIERIKEYAQRYGMTLEEAIERKRIGGDYFPIRDQEIVSVGILNFVHNNEDKASIMATVFTGEEKKVLDATAEKLEKIVKATGKPFFITGDGRKYALELLAGRAMAYMIEAKKEDQEISPELQNMIRIITNPKHGYLKPFDTRDSIDMQAVFGLGNGVIPLPKELQYKNEDLPRLAEETKRILLDMTKNYACYIEAQ
Ga0310135_032700Ga0310135_032700_143_403F088079MLTEKAIWLENVPFRNVDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSKVVSTK
Ga0310135_035792Ga0310135_035792_339_557F063614MSYVRLKLTIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELEEIMAELPLLKRV
Ga0310135_043384Ga0310135_043384_189_428F063614MNRRFKKMTYKRLYITIDTLVKTGFEKVNVLGIEDAQNDLWQIYDICQELMAFWDSELTEERIDELEEIMSELPLLKRV
Ga0310135_048698Ga0310135_048698_69_329F088079MLTEKAIWLENVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFVHISEIYKVDITFFKSNVVSTK
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