NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033999

3300033999: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-2



Overview

Basic Information
IMG/M Taxon OID3300033999 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0324324 | Ga0310134
Sample NameFracking water microbial communities from deep shales in Oklahoma, United States - M1-7-2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size195297360
Sequencing Scaffolds2
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)N/ADepth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022008Metagenome / Metatranscriptome216Y
F066897Metagenome / Metatranscriptome126Y
F082560Metagenome113N
F103496Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0310134_001705All Organisms → cellular organisms → Bacteria15148Open in IMG/M
Ga0310134_006088All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales4901Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0310134_001705Ga0310134_001705_3225_3569F082560VSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAMGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEGQI
Ga0310134_001705Ga0310134_001705_4878_5195F066897MNSKWFWLIIIAIILTSAVFLWHNHTSTQELLLQTKETIETTKEILEKNKNALQKIDEITQKMQDVTRIAKEAGDERVKEIKFVSDDSFLNIVNKYSTLMVERVE
Ga0310134_001705Ga0310134_001705_5192_5422F103496MPIDDKIRRLPLTKLIALCFTIFTCVLIILDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTAERRKDS
Ga0310134_001705Ga0310134_001705_5424_5771F022008MNDIEFLREALNDLSKQLQTLSEDNRASFGRIYDRLTKIETQMTEREHQFNRYEKTLNNHEKRIRAVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0310134_006088Ga0310134_006088_148_375F103496MSFNDGVRRLPLTKLIALYFTIFTCVLIVLDVTSLCPLTERSADLLKWLGGTIIVGYFGKSAYEHGVNIKKSDQS
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