NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034305

3300034305: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S65 (Eukaryote Community Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300034305 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0135752 | Gp0349002 | Ga0326782
Sample NameMetatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S65 (Eukaryote Community Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22150855
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → microcosm → soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000360Metagenome / Metatranscriptome1232Y
F006780Metagenome / Metatranscriptome364Y
F016097Metagenome / Metatranscriptome249Y
F058597Metagenome / Metatranscriptome134Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0326782_07857Not Available820Open in IMG/M
Ga0326782_09502All Organisms → cellular organisms → Eukaryota675Open in IMG/M
Ga0326782_10148All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia631Open in IMG/M
Ga0326782_11253Not Available571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0326782_07857Ga0326782_07857_53_598F016097MSLRVVLVALALAVASVAGERVNCREVNGRFDCVSVTPVSDLTAQNLYILWLQSNRQGQDHALNIDVPNYQIQDVIQAAAKGASANSHTNINVNLAKPDVTFLAQKEERIGDHTQSFDVSLQYDRLQGQSVHFADEGAGSQRYSPLTGSIQEPSGGSSFGSGSSRPTSGRPGGRPTFGGN
Ga0326782_09502Ga0326782_09502_37_675F006780MMKILALSLFVIINCVIISESCTCTTTSQLEQFLSNSTNYPYVAEVQILSKVSNNGQYNDDLVRYRAQVITVFNGCLKTGKCPILLETQNNSATCGRPLDNAIGQTYVISFRPGSTSCKNSYGFGLCDYFALSSDLQSTDDMWLLNNWENDCLGVCATGKHVQCLTAPCNTAQAPSGCDTYQMPCTDNYCNGCNAIWWNNDGTMLCHSTAVPE
Ga0326782_10148Ga0326782_10148_2_604F000360MPRIESHDSKREFWLDNITLCGYDVIPENIHFHLESDSDLSFKDIETKSYTHLVIRLDKFRTELKNLKFWYKKKTFPELTDSGVVTFRIAGDGARLNIVFTVEQPSGGRPRLTEGYADFHIRQMDIEFDKSTLKHDVLVPMLTSLFKLQIQTQIEKVVENNLTGAIQKLGEQLTLTLSEVNRPFTGGLESARQALKKSEVS
Ga0326782_11253Ga0326782_11253_1_567F058597MKHAILLALVAAAAVSAHEAYPSKVYGAVLPPHEHYDCDATDGKCYAPKSYGQGYEASGYSYKRQYPYPGPKARFCAKLKRLGAFIGGIINKIIKGFKHTWVHFKKHWKEHCAIIKSDLARFEDWKTCEAKKFKDWWGYHHDLCKTRKQLWDDAMREFHRQWCHYKKTRKEEYEARKKECGIKDKDYDD
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