NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 7000000038

7000000038: Human stool microbial communities from NIH, USA - visit 1, subject 160400887



Overview

Basic Information
IMG/M Taxon OID7000000038 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052503 | Ga0030540
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 160400887
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size220664319
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F078004Metagenome117N
F087336Metagenome110N
F088920Metagenome109Y
F089054Metagenome109N
F090514Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C4063479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae575Open in IMG/M
C4197096All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1220Open in IMG/M
C4215606All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1476Open in IMG/M
C4239432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2050Open in IMG/M
C4264404All Organisms → cellular organisms → Bacteria3811Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C4063479C4063479__gene_165720F090514WSSRMNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF
C4066007C4066007__gene_167318F078004YRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
C4108922C4108922__gene_195422F078004IHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
C4197096C4197096__gene_262895F013656LKNNIKKIYKEPLKSEMETTVNVMYGENKLSIYTNKVDLQKQLNKLIGEPIKEYKIKRSISGSLWEMSLNDKTKIQKVIVKANIYEL
C4215606C4215606__gene_280432F088920VSANLHHYPAFGIGVILHLILHFSPKAAIFAPKRAISLIFVPTLFFAGLSVLFPHTSPKISGQTSLYQPWLSPYCLFKD
C4239432C4239432__gene_306779F087336MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP
C4264404C4264404__gene_344756F089054MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINQWHKHSTYIRLKLREILEVNLTDITLIDIISLP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.