NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000074

7000000074: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352



Overview

Basic Information
IMG/M Taxon OID7000000074 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052546 | Ga0031116
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size121878595
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022002Metagenome216Y
F042387Metagenome158N
F064818Metagenome128N
F074985Metagenome119N
F077403Metagenome117N
F081454Metagenome114N
F081456Metagenome114N
F085821Metagenome111N
F097525Metagenome104N
F101360Metagenome102N
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C2768262Not Available573Open in IMG/M
SRS065099_LANL_scaffold_12364All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes41410Open in IMG/M
SRS065099_LANL_scaffold_12599Not Available1219Open in IMG/M
SRS065099_LANL_scaffold_15219All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium1163Open in IMG/M
SRS065099_LANL_scaffold_18334All Organisms → Viruses → Predicted Viral4294Open in IMG/M
SRS065099_LANL_scaffold_33435All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1195Open in IMG/M
SRS065099_LANL_scaffold_34938All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1473Open in IMG/M
SRS065099_LANL_scaffold_48856All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes829Open in IMG/M
SRS065099_LANL_scaffold_50930All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis993Open in IMG/M
SRS065099_LANL_scaffold_73328Not Available564Open in IMG/M
SRS065099_LANL_scaffold_86479All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales7195Open in IMG/M
SRS065099_LANL_scaffold_97669All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium925Open in IMG/M
SRS065099_LANL_scaffold_98382Not Available3557Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C2768262C2768262__gene_216664F022002ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS065099_LANL_scaffold_12364SRS065099_LANL_scaffold_12364__gene_21248F103434VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTGSK
SRS065099_LANL_scaffold_12364SRS065099_LANL_scaffold_12364__gene_21274F101360VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTSQEEAIRELISTGDISILEIEYGDA
SRS065099_LANL_scaffold_12599SRS065099_LANL_scaffold_12599__gene_21691F022002MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLCSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI
SRS065099_LANL_scaffold_15219SRS065099_LANL_scaffold_15219__gene_26385F097525MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASF
SRS065099_LANL_scaffold_18334SRS065099_LANL_scaffold_18334__gene_31882F074985VELTDGGWYNTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGRTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMNKILMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS065099_LANL_scaffold_33435SRS065099_LANL_scaffold_33435__gene_58821F064818MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDE
SRS065099_LANL_scaffold_34938SRS065099_LANL_scaffold_34938__gene_61479F081454MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK
SRS065099_LANL_scaffold_48856SRS065099_LANL_scaffold_48856__gene_86450F081456LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLVITAIGFLFAAFTVILYTISAE
SRS065099_LANL_scaffold_50930SRS065099_LANL_scaffold_50930__gene_90097F085821MNDVFERLAALAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESTKRQILEHDKGKHDEVYIDAWVKANVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKIK
SRS065099_LANL_scaffold_73328SRS065099_LANL_scaffold_73328__gene_129660F022002GFTLGVTTTAEARAIIQRQGGKIEDTQAGSDEEVYVIMGLKYARRSTLSVGLYFYKGHLRRIAFVFNNLDVLEQIESELVDKYGTMAEGVGTSKEKVKGIVDAFTTLEVVRRFDYEGHIGFECAYIAYTDEELERAYSAETESEI
SRS065099_LANL_scaffold_86479SRS065099_LANL_scaffold_86479__gene_153534F077403MKIIMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWRRERNPIDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLDARGAELRKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSELAYYLQGYLYYLMNPQQAHDWYQVPYLPDHAMHSVATEAVVTEGKLRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEG
SRS065099_LANL_scaffold_97669SRS065099_LANL_scaffold_97669__gene_176279F042387LVSCSRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
SRS065099_LANL_scaffold_98382SRS065099_LANL_scaffold_98382__gene_177817F022002MSRRLALTLGLLLALLLSLPSHAQDGQSKEPINRTISGFTLGVTTPAQARAIIQRQGGKIISAEGTQAGSDDGFYAVTGLKYARRSTLTAGLYFYKGYLRKIAFLFDKLDVLELIESELENKYGMMAEGKETSKMKSKVIFDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELNRARSAEKESEI
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