NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000149

7000000149: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843



Overview

Basic Information
IMG/M Taxon OID7000000149 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052645 | Ga0027926
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size17827319
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes4
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036281Metagenome170N
F043235Metagenome156N
F043991Metagenome155N
F051214Metagenome144N
F053092Metagenome141N
F055792Metagenome138N
F071329Metagenome122N
F074985Metagenome119N
F098763Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C914273All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes509Open in IMG/M
C927208Not Available888Open in IMG/M
C931780All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis2030Open in IMG/M
SRS013881_WUGC_scaffold_10189All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes606Open in IMG/M
SRS013881_WUGC_scaffold_10525All Organisms → cellular organisms → Bacteria3323Open in IMG/M
SRS013881_WUGC_scaffold_11617All Organisms → Viruses → Predicted Viral1843Open in IMG/M
SRS013881_WUGC_scaffold_11954All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes793Open in IMG/M
SRS013881_WUGC_scaffold_6283All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae2195Open in IMG/M
SRS013881_WUGC_scaffold_7144All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes883Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C914273C914273__gene_28621F043991MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKASWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
C927208C927208__gene_34291F055792MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGAEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
C931780C931780__gene_36542F053092DDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS013881_WUGC_scaffold_10189SRS013881_WUGC_scaffold_10189__gene_10413F071329LHLMCKSPRVCKRARGYASETKGNMRPLYSKGILMLPVAKTVITGLSSLGAGMIASSLLQPFYKNANGIQKIILWFGGYGLGVAAGSLVQREVGKQFDEVVAAVKEARDHIEIED
SRS013881_WUGC_scaffold_10525SRS013881_WUGC_scaffold_10525__gene_10811F043235MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKKVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS013881_WUGC_scaffold_11617SRS013881_WUGC_scaffold_11617__gene_12404F036281MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFLYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHAMTNEKGHQSYDWVLENVEWAADTIRYF
SRS013881_WUGC_scaffold_11617SRS013881_WUGC_scaffold_11617__gene_12405F074985MTELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFNINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDEIFISDTFRKLRPVIVLHQEKFWHVMGLELNSYDGESCWYIYLKRQDSDFMTRIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKKTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYTLDHIKAMHID
SRS013881_WUGC_scaffold_11954SRS013881_WUGC_scaffold_11954__gene_12959F071329MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS013881_WUGC_scaffold_6283SRS013881_WUGC_scaffold_6283__gene_5692F098763MDRRTSLRVLSTVLYFTTKLFKAVVRTTISYNPSDEVEGKGGMNAIPTAVDE
SRS013881_WUGC_scaffold_7144SRS013881_WUGC_scaffold_7144__gene_6744F051214PGKIVAHDTHLRIDTEFIELKDCFDAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
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