NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000155

7000000155: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029



Overview

Basic Information
IMG/M Taxon OID7000000155 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052651 | Ga0031070
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 160765029
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43448863
Sequencing Scaffolds5
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F036281Metagenome170N
F043991Metagenome155N
F051214Metagenome144N
F061925Metagenome131N
F071327Metagenome122N
F071329Metagenome122N
F081456Metagenome114N
F097525Metagenome104N
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C928510All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae998Open in IMG/M
SRS020862_Baylor_scaffold_12162All Organisms → cellular organisms → Bacteria133730Open in IMG/M
SRS020862_Baylor_scaffold_25357All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes8127Open in IMG/M
SRS020862_Baylor_scaffold_28394All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum1426Open in IMG/M
SRS020862_Baylor_scaffold_7547All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales31675Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C928510C928510__gene_68853F097525MQQKKIMFKIQNAYQKIIFSIHGHRDRKGNFEDWLKVEVKVKDDLEGKYYTQVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKV
SRS020862_Baylor_scaffold_12162SRS020862_Baylor_scaffold_12162__gene_16750F101358MTEKHSASLPPRQEHLLTQPITMDGAPEKRTAHPDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGKLQPVADTTHTTHQNDSTDEQETEVMPAQGDDTYEHLGGDSARQLVGSVAAKASDGEVDNSPLVERVLGRVE
SRS020862_Baylor_scaffold_24774SRS020862_Baylor_scaffold_24774__gene_36876F061925LKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEV
SRS020862_Baylor_scaffold_25357SRS020862_Baylor_scaffold_25357__gene_37909F018385MMTEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS020862_Baylor_scaffold_25357SRS020862_Baylor_scaffold_25357__gene_37910F071329MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDNVEIED
SRS020862_Baylor_scaffold_25357SRS020862_Baylor_scaffold_25357__gene_37911F051214MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHQIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS020862_Baylor_scaffold_25357SRS020862_Baylor_scaffold_25357__gene_37912F043991MSKKNPSVIDYFDLNGDLNEEAYEFEEVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
SRS020862_Baylor_scaffold_25357SRS020862_Baylor_scaffold_25357__gene_37915F027205VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
SRS020862_Baylor_scaffold_25357SRS020862_Baylor_scaffold_25357__gene_37916F036281MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHIKSFMRVPGSTDLWITAERERGHWYTFRLSDDQKSKFTRHTITNEKGHQTYDWVLKNVEWAADTIRYF
SRS020862_Baylor_scaffold_28394SRS020862_Baylor_scaffold_28394__gene_45189F071327MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG
SRS020862_Baylor_scaffold_7547SRS020862_Baylor_scaffold_7547__gene_9624F081456MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE
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