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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 7000000214 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052726 | Ga0031018 |
| Sample Name | Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763759525 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 74923267 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 23 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 8 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018385 | Metagenome | 235 | Y |
| F030786 | Metagenome | 184 | N |
| F036281 | Metagenome | 170 | N |
| F042387 | Metagenome | 158 | N |
| F049707 | Metagenome | 146 | N |
| F051212 | Metagenome | 144 | N |
| F051214 | Metagenome | 144 | N |
| F054111 | Metagenome | 140 | N |
| F059076 | Metagenome | 134 | N |
| F061927 | Metagenome | 131 | N |
| F064818 | Metagenome | 128 | N |
| F064819 | Metagenome | 128 | N |
| F067846 | Metagenome | 125 | Y |
| F071327 | Metagenome | 122 | N |
| F081454 | Metagenome | 114 | N |
| F081456 | Metagenome | 114 | N |
| F089056 | Metagenome | 109 | N |
| F097490 | Metagenome | 104 | N |
| F097525 | Metagenome | 104 | N |
| F101358 | Metagenome | 102 | Y |
| F105377 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| C2596579 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 604 | Open in IMG/M |
| C2606190 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 676 | Open in IMG/M |
| C2608600 | All Organisms → Viruses | 699 | Open in IMG/M |
| C2620406 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 847 | Open in IMG/M |
| C2626962 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 979 | Open in IMG/M |
| C2638613 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1454 | Open in IMG/M |
| C2641978 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1760 | Open in IMG/M |
| C2647062 | All Organisms → Viruses → Predicted Viral | 3147 | Open in IMG/M |
| C2647258 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae | 3265 | Open in IMG/M |
| SRS015158_WUGC_scaffold_14037 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 781 | Open in IMG/M |
| SRS015158_WUGC_scaffold_15111 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 844 | Open in IMG/M |
| SRS015158_WUGC_scaffold_28316 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 2061 | Open in IMG/M |
| SRS015158_WUGC_scaffold_32828 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3205 | Open in IMG/M |
| SRS015158_WUGC_scaffold_3572 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1608 | Open in IMG/M |
| SRS015158_WUGC_scaffold_36649 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1601 | Open in IMG/M |
| SRS015158_WUGC_scaffold_41844 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 736 | Open in IMG/M |
| SRS015158_WUGC_scaffold_45629 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10 | 1831 | Open in IMG/M |
| SRS015158_WUGC_scaffold_51358 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1871 | Open in IMG/M |
| SRS015158_WUGC_scaffold_53858 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1827 | Open in IMG/M |
| SRS015158_WUGC_scaffold_58115 | All Organisms → Viruses → Predicted Viral | 3693 | Open in IMG/M |
| SRS015158_WUGC_scaffold_58412 | All Organisms → cellular organisms → Bacteria | 53450 | Open in IMG/M |
| SRS015158_WUGC_scaffold_9428 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | 1002 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| C2596579 | C2596579__gene_121156 | F097490 | NTENNYYLLSPIVSIMTKHLQYIGGEMIEGEIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYMEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM |
| C2606190 | C2606190__gene_124270 | F049707 | VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKAS |
| C2608600 | C2608600__gene_125070 | F105377 | VRDFDNLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLLRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRAHYRG |
| C2620406 | C2620406__gene_128883 | F064818 | MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMDNTFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPPCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGK |
| C2626962 | C2626962__gene_131065 | F081454 | MKTFKLILLLFITSASLVFGQEKRYFFKYEFQPNSKYLIKYKIDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGETINRKIPLQGVKLIGDIVNGKKMEVKNVEGKIDEDTKKILVESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK |
| C2638613 | C2638613__gene_135139 | F042387 | MKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNSSEVLVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKKIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK |
| C2641978 | C2641978__gene_136367 | F064819 | MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSYLEELTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI |
| C2647062 | C2647062__gene_138485 | F018385 | MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISQLSLDS |
| C2647258 | C2647258__gene_138594 | F067846 | MSIIEAWELLEFNKWDKQCSKEDDYNRAVEMEIEAIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND |
| SRS015158_WUGC_scaffold_14037 | SRS015158_WUGC_scaffold_14037__gene_15349 | F071327 | MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSLLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG |
| SRS015158_WUGC_scaffold_15111 | SRS015158_WUGC_scaffold_15111__gene_16749 | F059076 | GGASINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTDIGQLVDGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLKKLE |
| SRS015158_WUGC_scaffold_28316 | SRS015158_WUGC_scaffold_28316__gene_33136 | F089056 | MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEEYDVSFIAITFTNKNEILFRKGIQ |
| SRS015158_WUGC_scaffold_32828 | SRS015158_WUGC_scaffold_32828__gene_38965 | F064818 | MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK |
| SRS015158_WUGC_scaffold_3572 | SRS015158_WUGC_scaffold_3572__gene_3284 | F054111 | MVFKNLEKENMNKPLDNITHEVFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMKKTVKIKWGLDYGLSLETKALYTSDKDLFLNILHKEILSLENQ |
| SRS015158_WUGC_scaffold_36649 | SRS015158_WUGC_scaffold_36649__gene_44206 | F097525 | MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGETVASFKKK |
| SRS015158_WUGC_scaffold_41844 | SRS015158_WUGC_scaffold_41844__gene_51098 | F051212 | MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKSVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK |
| SRS015158_WUGC_scaffold_45629 | SRS015158_WUGC_scaffold_45629__gene_56221 | F081456 | MFEEPPIYYILISLIFLIIFGAVAFATWLVWLTSISFMAKLVMTAIGFLLCAITVILYTISAE |
| SRS015158_WUGC_scaffold_51358 | SRS015158_WUGC_scaffold_51358__gene_64535 | F030786 | MLVVMIVTGSLQLLLKNGSTTKGRNAVGTKKISLADITDGDKSKVVAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYQSLKVDC |
| SRS015158_WUGC_scaffold_53858 | SRS015158_WUGC_scaffold_53858__gene_68785 | F061927 | MKNSIFILSTMLILGSCSSDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDERIDKAISSCIGK |
| SRS015158_WUGC_scaffold_58115 | SRS015158_WUGC_scaffold_58115__gene_77908 | F051214 | MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVIRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI |
| SRS015158_WUGC_scaffold_58115 | SRS015158_WUGC_scaffold_58115__gene_77913 | F036281 | MITLIKVDEGPVDIYELRMQYLAKLKETNGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHAITNEKGHQSYDWVLKNVEWAADTIRYF |
| SRS015158_WUGC_scaffold_58412 | SRS015158_WUGC_scaffold_58412__gene_79420 | F101358 | MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR |
| SRS015158_WUGC_scaffold_9428 | SRS015158_WUGC_scaffold_9428__gene_10011 | F059076 | MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWIANFDTGINYNKYAVAIMSATFKMPSPASGGLVMLRGGNNVPSVDFGGGKYGVTTAPATVLLQQHGANWAIYADYPNIGVYELSSGSTTLGQEVNGTWVITLLVGKKDAVNFTELEFSQGGNNSGTGITNNTYKTGLENFLKKLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |